Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3644

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3644: 12012 - Hypothetical Protein, at 242655 to 243950 12012 mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244941 to 247626 12013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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241,820 - -2.0
241,822 + -1.5
241,836 + -1.1
241,965 + -0.0
241,967 + -1.3
241,991 + -2.8
241,995 + -0.7
242,098 - 1.7
242,115 - -1.2
242,122 + -0.3
242,123 - -1.4
242,132 - -1.1
242,143 + 0.3
242,144 + 0.1
242,146 - 3.2
242,259 + -1.5
242,302 + -1.8
242,306 + -1.2
242,409 + -1.4
242,524 - -2.2
242,669 - -1.7
242,725 - -0.5
242,726 + -1.9
242,911 + 12012 mRNA_3644 0.20 1.3
243,065 - 12012 mRNA_3644 0.32 0.5
243,127 - 12012 mRNA_3644 0.36 -0.2
243,160 - 12012 mRNA_3644 0.39 -1.2
243,462 + 12012 mRNA_3644 0.62 -1.1
243,573 + 12012 mRNA_3644 0.71 -0.3
244,103 + -2.2
244,141 - -0.8
244,152 + -0.8
244,171 - -2.0
244,285 + -2.5
244,311 + -2.0
244,327 + 0.6
244,411 + -1.9
244,423 + -1.9
244,435 - -3.2
244,443 + -3.0
244,451 + 1.9
244,576 - -3.6
244,580 + 1.9
244,587 + -1.7
244,591 - -0.8
244,593 - -0.4
244,697 - -0.8
244,722 + -0.7
244,731 + -0.4
244,734 - -2.0
244,742 + -0.2
244,753 + -1.4
244,759 + 0.3
244,763 - 0.4
244,780 + -1.0
244,784 - -2.7
244,785 + 1.2
244,886 + 0.6
244,898 - 0.0
244,949 + -0.0