Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3640

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225683 to 228983 12007 mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229768 to 230624 12008 mRNA_3641: 12009 - K17615 PPG1 serine/threonine-protein phosphatase PPG1, at 230658 to 231997 12009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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228,996 + 0.6
229,004 + -0.6
229,012 + -0.5
229,121 - 0.6
229,139 - 0.0
229,140 + -1.7
229,281 - -0.2
229,282 + -0.1
229,289 - 0.6
229,291 + -3.6
229,292 + -1.5
229,298 - -1.1
229,299 + -1.5
229,302 + 0.1
229,314 + -1.2
229,317 + -0.8
229,320 + -2.3
229,326 - -1.2
229,326 - -0.8
229,327 + -0.0
229,596 + 1.2
229,750 - -1.5
229,868 + 12008 mRNA_3640 0.12 -0.7
229,870 - 12008 mRNA_3640 0.12 -2.5
229,872 - 12008 mRNA_3640 0.12 0.3
230,158 - 12008 mRNA_3640 0.46 -0.8
230,176 + 12008 mRNA_3640 0.48 -3.2
230,185 - 12008 mRNA_3640 0.49 -1.7
230,218 - 12008 mRNA_3640 0.53 -0.1
230,302 + 12008 mRNA_3640 0.62 -0.0
230,308 + 12008 mRNA_3640 0.63 -1.0
230,474 + 12008 mRNA_3640 0.82 -0.8
230,495 + 12008 mRNA_3640 0.85 0.2
230,587 + -1.8
230,605 + -1.1
230,630 + -1.2
230,658 - -1.7
230,915 + 12009 mRNA_3641 0.19 -1.9
231,185 + 12009 mRNA_3641 0.39 -3.5