Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3613

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3612: 11980 - Hypothetical Protein, at 165925 to 166786 11980 mRNA_3613: 11981 - K09518 DNAJB12 DnaJ homolog subfamily B member 12, at 166931 to 168714 11981 mRNA_3614: 11982 - K00844 HK hexokinase, at 168921 to 171273 11982

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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165,959 - 0.3
165,966 + -2.3
166,111 - 11980 mRNA_3612 0.22 -4.4
166,253 - 11980 mRNA_3612 0.38 0.2
166,526 + 11980 mRNA_3612 0.70 -2.6
166,548 - 11980 mRNA_3612 0.72 -1.2
166,652 + 11980 mRNA_3612 0.84 0.6
166,659 + 11980 mRNA_3612 0.85 -1.3
166,672 + 11980 mRNA_3612 0.87 -0.6
166,679 + 11980 mRNA_3612 0.87 -0.3
166,696 + 11980 mRNA_3612 0.89 -2.5
166,838 + -2.3
166,842 - 2.2
166,855 - -0.3
166,932 + 0.2
166,954 - -2.0
166,963 + -2.4
167,121 - 11981 mRNA_3613 0.11 -1.9
167,140 + 11981 mRNA_3613 0.12 -0.6
167,251 - 11981 mRNA_3613 0.18 -3.6
168,274 - 11981 mRNA_3613 0.75 0.0
168,424 - 11981 mRNA_3613 0.84 -3.4
168,437 - 11981 mRNA_3613 0.84 -1.9
168,585 - -1.1
168,691 - -0.3
169,020 + -0.3
169,450 + 11982 mRNA_3614 0.22 -2.0
169,695 - 11982 mRNA_3614 0.33 0.4