Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3601

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140474 to 142309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149343 to 150921 11970

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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142,602 - -1.8
142,772 - 0.0
142,793 + -0.3
142,861 - 0.6
142,915 + 0.8
142,916 - -1.0
142,923 + -0.8
142,932 - -2.0
142,955 - -1.2
142,958 - -2.8
143,046 - -3.2
143,076 + -3.6
143,098 - -1.6
143,255 - -2.0
143,416 + -2.6
143,418 + -0.0
144,125 - 11969 mRNA_3601 0.16 0.6
148,704 - -0.2
148,707 + -4.5
148,850 - -2.6
148,854 - -2.8
148,986 + -2.0
149,011 - -1.9
149,019 + -1.6
149,105 + -1.2
149,127 - -4.1
149,275 + -1.0
149,289 - -0.8
149,297 - -3.0
149,609 - 11970 mRNA_3602 0.17 -1.2