Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3600

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138513 to 139861 11967 mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140474 to 142309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,086 + -1.0
140,121 - -3.2
140,123 + 0.4
140,144 + -2.7
140,254 - -0.8
140,255 + -0.2
140,259 + -0.6
140,262 + 2.4
140,263 - -0.1
140,265 + -0.8
140,265 - -0.7
140,266 + -3.5
140,274 + -2.4
140,276 + -1.9
140,709 - 11968 mRNA_3600 0.13 -1.5
140,878 - 11968 mRNA_3600 0.22 -2.9
141,154 + 11968 mRNA_3600 0.37 -1.4
141,172 + 11968 mRNA_3600 0.38 0.3
141,451 - 11968 mRNA_3600 0.53 -0.2
142,196 - -2.8
142,209 + -3.1
142,602 - -1.8
142,772 - 0.0
142,793 + -0.3
142,861 - 0.6
142,915 + 0.8
142,916 - -1.0
142,923 + -0.8
142,932 - -2.0
142,955 - -1.2
142,958 - -2.8
143,046 - -3.2
143,076 + -3.6
143,098 - -1.6
143,255 - -2.0