Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3588

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111593 to 112967 11955 mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113212 to 115744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116230 to 117801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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113,196 - -1.4
113,198 + -0.6
113,676 - 11956 mRNA_3588 0.18 -2.2
114,061 + 11956 mRNA_3588 0.34 -0.8
114,081 + 11956 mRNA_3588 0.34 -3.5
114,154 - 11956 mRNA_3588 0.37 -1.2
114,174 + 11956 mRNA_3588 0.38 -1.0
114,322 - 11956 mRNA_3588 0.44 -1.4
114,393 + 11956 mRNA_3588 0.47 -1.9
114,461 + 11956 mRNA_3588 0.49 -3.4
114,508 - 11956 mRNA_3588 0.51 1.4
114,528 + 11956 mRNA_3588 0.52 -3.0
114,540 + 11956 mRNA_3588 0.52 -2.0
114,555 - 11956 mRNA_3588 0.53 -0.8
114,555 - 11956 mRNA_3588 0.53 -1.1
114,794 + 11956 mRNA_3588 0.62 -1.1
114,901 + 11956 mRNA_3588 0.67 0.7
115,197 - 11956 mRNA_3588 0.78 -3.4
115,790 - -3.0
116,215 + 0.2
116,230 - -1.4
116,234 + -2.2
116,372 + -0.3