Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3582

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97924 to 100153 11949 mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100447 to 103297 11950 mRNA_3583: 11951 - Hypothetical Protein, at 104086 to 104307 11951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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99,518 - 11949 mRNA_3581 0.71 -0.7
99,528 - 11949 mRNA_3581 0.72 0.3
99,557 - 11949 mRNA_3581 0.73 -0.1
99,652 + 11949 mRNA_3581 0.77 -1.2
99,703 - 11949 mRNA_3581 0.80 -2.2
99,858 - 11949 mRNA_3581 0.87 -4.2
100,348 - -1.3
100,648 - -1.0
101,094 - 11950 mRNA_3582 0.23 -1.0
101,166 - 11950 mRNA_3582 0.25 0.2
101,683 + 11950 mRNA_3582 0.43 -2.4
101,817 - 11950 mRNA_3582 0.48 1.3
101,954 + 11950 mRNA_3582 0.53 -2.8
102,239 + 11950 mRNA_3582 0.63 -1.1
102,408 - 11950 mRNA_3582 0.69 -1.2
102,529 - 11950 mRNA_3582 0.73 -0.1
102,692 + 11950 mRNA_3582 0.79 -1.6
102,844 + 11950 mRNA_3582 0.84 -2.2
102,928 - 11950 mRNA_3582 0.87 -0.3
102,980 - 11950 mRNA_3582 0.89 -2.9
103,300 + 0.1
103,356 + -0.6
103,374 - -1.0
103,394 - 0.1
103,395 + -0.3
103,399 - 0.5
103,406 + -1.7
103,407 + -3.1
103,414 - -2.5
103,415 + -0.0
103,422 + -0.9
103,436 - -2.4
103,438 - -1.8
103,440 - -3.3
103,486 - -2.7
103,489 + -0.0
103,709 + -2.2
103,715 - -1.0
103,715 - 0.1
103,717 - -0.1
103,734 + -0.6
103,876 - -1.1
104,015 + -3.2
104,134 - 11951 mRNA_3583 0.22 -1.2
104,146 + 11951 mRNA_3583 0.27 -0.2
104,147 - 11951 mRNA_3583 0.27 -2.1