Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3581

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97177 to 97844 11948 mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97924 to 100153 11949 mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100447 to 103297 11950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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96,941 - -0.5
97,069 - -1.6
97,201 - 0.8
97,372 + 11948 mRNA_3580 0.29 -2.9
97,627 - 11948 mRNA_3580 0.67 -2.3
97,802 - -3.2
97,809 + -0.4
97,821 - -1.2
97,822 + 0.1
97,854 - -0.7
97,854 + -0.1
97,855 - -1.8
97,858 + 0.0
97,858 - -1.3
97,860 - 0.9
97,863 + -1.4
97,877 + -0.2
97,877 + 1.0
97,881 + -4.3
97,989 - -1.7
98,009 - -1.9
98,065 + -1.9
98,068 - -1.2
98,306 - 11949 mRNA_3581 0.17 -1.4
98,334 - 11949 mRNA_3581 0.18 -1.1
98,338 - 11949 mRNA_3581 0.19 -0.5
98,343 - 11949 mRNA_3581 0.19 -1.4
98,344 - 11949 mRNA_3581 0.19 0.0
98,344 + 11949 mRNA_3581 0.19 0.7
98,355 + 11949 mRNA_3581 0.19 -1.8
98,358 + 11949 mRNA_3581 0.19 -2.9
98,378 + 11949 mRNA_3581 0.20 -1.6
98,501 - 11949 mRNA_3581 0.26 1.0
98,514 + 11949 mRNA_3581 0.26 -1.8
98,604 + 11949 mRNA_3581 0.30 -2.4
98,793 - 11949 mRNA_3581 0.39 -1.8
99,075 - 11949 mRNA_3581 0.52 -1.2
99,096 + 11949 mRNA_3581 0.53 -0.3
99,361 - 11949 mRNA_3581 0.64 -1.1
99,407 + 11949 mRNA_3581 0.67 -1.2
99,518 - 11949 mRNA_3581 0.71 -0.7
99,528 - 11949 mRNA_3581 0.72 0.3
99,557 - 11949 mRNA_3581 0.73 -0.1
99,652 + 11949 mRNA_3581 0.77 -1.2
99,703 - 11949 mRNA_3581 0.80 -2.2
99,858 - 11949 mRNA_3581 0.87 -4.2
100,348 - -1.3
100,648 - -1.0
101,094 - 11950 mRNA_3582 0.23 -1.0