Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3570

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72269 to 75186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75276 to 76903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77591 to 78625 11939

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
74,631 - 11937 mRNA_3569 0.81 -1.6
74,771 - 11937 mRNA_3569 0.86 -1.9
74,786 - 11937 mRNA_3569 0.86 -0.6
74,794 + 11937 mRNA_3569 0.87 -1.4
74,802 - 11937 mRNA_3569 0.87 -0.6
74,812 - 11937 mRNA_3569 0.87 -1.5
74,840 - 11937 mRNA_3569 0.88 -1.3
74,932 - -1.0
74,934 - -2.1
74,936 - -0.7
74,939 - -0.2
74,963 + -1.7
74,965 + -0.1
75,062 + -2.5
75,087 - 0.0
75,087 - -2.1
75,105 + -0.7
75,119 + -1.7
75,119 + -3.7
75,122 - -1.9
75,123 - -1.3
75,271 + -1.4
75,548 - 11938 mRNA_3570 0.17 -2.3
75,558 + 11938 mRNA_3570 0.17 0.5
75,807 + 11938 mRNA_3570 0.33 -2.9
75,994 + 11938 mRNA_3570 0.44 -2.1
76,099 - 11938 mRNA_3570 0.51 -0.8
76,125 + 11938 mRNA_3570 0.52 1.9
76,288 + 11938 mRNA_3570 0.62 -1.3
76,380 - 11938 mRNA_3570 0.68 -1.8
76,413 + 11938 mRNA_3570 0.70 -1.8
76,585 - 11938 mRNA_3570 0.80 -0.3
76,851 + -3.7
76,863 + 0.2
77,105 + -1.5
77,260 - -0.5
77,608 - -2.2