Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3566

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70046 to 70788 11935

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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67,345 - 11933 mRNA_3565 0.84 -1.0
67,730 + 0.2
67,893 - -2.6
67,913 + -1.6
67,917 - -0.4
68,040 - -1.2
68,047 + 0.1
68,052 - -2.7
68,063 - -0.8
68,072 + -0.1
68,075 + -1.8
68,165 - -0.2
68,174 + -1.2
68,174 - -1.3
68,209 + -0.0
68,209 - 0.1
68,214 - -3.0
68,217 + -1.0
68,226 - -2.2
68,226 + -0.2
68,227 + -1.5
68,238 - -1.7
68,239 - -1.0
68,246 + -0.1
68,259 + -0.3
68,289 - -0.4
68,314 + -3.3
68,356 - 0.1
68,390 + 0.5
68,392 - -5.0
68,395 - -1.7
68,500 + 11934 mRNA_3566 0.15 -2.9
68,647 + 11934 mRNA_3566 0.28 -2.2
68,665 + 11934 mRNA_3566 0.29 -2.3
68,939 - 11934 mRNA_3566 0.53 -1.7
69,236 + 11934 mRNA_3566 0.79 -0.1
69,406 - 0.2
69,416 + -1.4
69,522 - -2.4
69,532 + 0.5
69,728 + -3.4
69,827 - -3.0