Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3565

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3564: 11932 - Hypothetical Protein, at 63584 to 64390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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63,826 + 11932 mRNA_3564 0.30 -2.5
63,842 - 11932 mRNA_3564 0.32 -0.5
63,850 + 11932 mRNA_3564 0.33 -0.7
63,914 - 11932 mRNA_3564 0.41 -2.1
63,982 - 11932 mRNA_3564 0.49 -0.1
63,992 - 11932 mRNA_3564 0.51 -3.4
63,996 - 11932 mRNA_3564 0.51 -0.2
63,998 + 11932 mRNA_3564 0.51 -1.4
64,015 + 11932 mRNA_3564 0.53 -2.8
64,058 + 11932 mRNA_3564 0.59 -0.8
64,095 + 11932 mRNA_3564 0.63 -1.1
64,132 - 11932 mRNA_3564 0.68 -0.0
64,239 - 11932 mRNA_3564 0.81 -0.8
64,242 - 11932 mRNA_3564 0.82 -1.0
64,252 + 11932 mRNA_3564 0.83 -0.3
64,267 + 11932 mRNA_3564 0.85 -2.1
64,298 - 11932 mRNA_3564 0.88 -2.1
64,362 - 0.2
64,392 - 0.2
64,403 - -2.1
64,416 - -0.2
64,425 - -1.0
64,518 + -3.3
64,528 + -1.4
64,575 + -1.9
64,658 + -3.5
64,699 + -1.2
64,730 + -3.1
64,733 - 0.5
64,756 - -1.3
65,032 + 1.0
65,051 + 1.9
65,056 + -0.2
65,205 - 11933 mRNA_3565 0.13 -0.3
65,389 - 11933 mRNA_3565 0.19 -0.0
65,397 + 11933 mRNA_3565 0.19 -0.5
65,444 - 11933 mRNA_3565 0.21 0.3
65,457 + 11933 mRNA_3565 0.21 -1.9
65,569 - 11933 mRNA_3565 0.25 -1.2
65,586 - 11933 mRNA_3565 0.25 -3.1
65,734 - 11933 mRNA_3565 0.30 -1.2
66,001 - 11933 mRNA_3565 0.39 -0.8
66,646 + 11933 mRNA_3565 0.61 0.0
66,769 + 11933 mRNA_3565 0.65 -3.6
67,083 + 11933 mRNA_3565 0.75 1.3
67,084 - 11933 mRNA_3565 0.75 0.0
67,192 - 11933 mRNA_3565 0.79 -0.9
67,345 - 11933 mRNA_3565 0.84 -1.0
67,730 + 0.2
67,893 - -2.6
67,913 + -1.6
67,917 - -0.4
68,040 - -1.2
68,047 + 0.1
68,052 - -2.7
68,063 - -0.8
68,072 + -0.1
68,075 + -1.8
68,165 - -0.2
68,174 + -1.2
68,174 - -1.3
68,209 + -0.0
68,209 - 0.1
68,214 - -3.0
68,217 + -1.0
68,226 - -2.2
68,226 + -0.2
68,227 + -1.5
68,238 - -1.7
68,239 - -1.0
68,246 + -0.1
68,259 + -0.3
68,289 - -0.4
68,314 + -3.3
68,356 - 0.1
68,390 + 0.5
68,392 - -5.0
68,395 - -1.7
68,500 + 11934 mRNA_3566 0.15 -2.9
68,647 + 11934 mRNA_3566 0.28 -2.2
68,665 + 11934 mRNA_3566 0.29 -2.3