Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3558

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44062 to 47314 11926 mRNA_3559: 11927 - K18622 ADD adducin, at 47596 to 49033 11927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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43,320 - 11925 mRNA_3557 0.76 -1.7
43,869 - -0.0
43,894 - -0.5
43,895 + -0.8
44,664 - 11926 mRNA_3558 0.19 0.2
47,522 - -2.0
47,525 + -0.5
47,529 - 0.9
47,530 - -1.1
47,532 + -3.3
47,533 - -1.8
47,536 - -1.5
47,536 - -1.0
47,537 + -2.7
47,537 + -1.9
47,538 - 1.2
47,538 + -2.4
47,539 + -0.8
47,547 - -0.6
47,553 + -0.8
47,563 - -3.0
47,709 + 0.8
47,713 - -2.1
47,906 + 11927 mRNA_3559 0.22 -1.5
48,016 - 11927 mRNA_3559 0.29 -0.9
48,283 + 11927 mRNA_3559 0.48 -2.3