Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3557

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44062 to 47314 11926

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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40,937 + -1.7
40,974 + 0.6
41,079 - -2.3
41,080 - -0.6
41,082 - -2.5
41,084 + -0.5
41,224 + 0.2
41,226 - -2.0
41,227 + -1.9
41,234 + -1.9
41,242 + -1.7
41,261 - -1.7
41,369 - -0.7
41,371 - -0.7
41,391 - -2.5
41,396 + -0.9
41,405 + -1.4
41,564 - 0.2
41,678 - -1.1
41,692 - 11925 mRNA_3557 0.10 -0.5
41,692 + 11925 mRNA_3557 0.10 -1.7
41,827 + 11925 mRNA_3557 0.16 -3.3
41,842 + 11925 mRNA_3557 0.16 -2.6
42,011 - 11925 mRNA_3557 0.23 -1.8
42,580 + 11925 mRNA_3557 0.46 -0.1
42,690 - 11925 mRNA_3557 0.51 -0.3
42,696 + 11925 mRNA_3557 0.51 -1.2
42,864 - 11925 mRNA_3557 0.58 -1.1
43,028 - 11925 mRNA_3557 0.64 -0.0
43,320 - 11925 mRNA_3557 0.76 -1.7
43,869 - -0.0
43,894 - -0.5
43,895 + -0.8
44,664 - 11926 mRNA_3558 0.19 0.2