Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,505 + -4.7
37,550 - -0.6
37,558 - -1.4
37,568 - 0.6
37,569 + -0.5
37,571 + 0.7
37,609 + -0.2
37,610 - -1.5
37,630 - 11923 mRNA_3555 0.12 -2.6
37,630 + 11923 mRNA_3555 0.12 -0.7
37,632 + 11923 mRNA_3555 0.12 -0.1
37,636 + 11923 mRNA_3555 0.13 -4.9
37,646 + 11923 mRNA_3555 0.14 -4.6
37,650 - 11923 mRNA_3555 0.15 -0.9
37,684 - 11923 mRNA_3555 0.19 -0.8
37,746 + 11923 mRNA_3555 0.27 -1.7
37,753 + 11923 mRNA_3555 0.28 2.6
37,760 + 11923 mRNA_3555 0.29 0.1
37,763 + 11923 mRNA_3555 0.29 0.5
37,812 - 11923 mRNA_3555 0.36 -1.8
37,822 - 11923 mRNA_3555 0.37 -1.6
37,833 + 11923 mRNA_3555 0.38 -3.1
37,833 - 11923 mRNA_3555 0.38 -0.6
37,835 + 11923 mRNA_3555 0.38 -3.2
37,844 - 11923 mRNA_3555 0.40 -2.5
37,848 - 11923 mRNA_3555 0.40 -1.8
37,861 + 11923 mRNA_3555 0.42 0.3
37,865 - 11923 mRNA_3555 0.42 -0.3
37,867 + 11923 mRNA_3555 0.43 -1.5
37,870 + 11923 mRNA_3555 0.43 -0.4
37,871 + 11923 mRNA_3555 0.43 -0.4
37,877 + 11923 mRNA_3555 0.44 -2.0
37,885 - 11923 mRNA_3555 0.45 -2.6
37,920 + 11923 mRNA_3555 0.49 -2.6
37,920 + 11923 mRNA_3555 0.49 -0.5
37,924 + 11923 mRNA_3555 0.50 -1.4
37,931 + 11923 mRNA_3555 0.51 -3.1
37,979 + 11923 mRNA_3555 0.57 -1.7
37,984 + 11923 mRNA_3555 0.58 -2.0
37,994 + 11923 mRNA_3555 0.59 -1.5
38,032 + 11923 mRNA_3555 0.64 0.0
38,081 - 11923 mRNA_3555 0.70 0.0
38,081 - 11923 mRNA_3555 0.70 -2.6
38,084 - 11923 mRNA_3555 0.71 -0.8
38,086 + 11923 mRNA_3555 0.71 -1.1
38,090 + 11923 mRNA_3555 0.71 -2.1
38,115 + 11923 mRNA_3555 0.75 -1.7
38,128 + 11923 mRNA_3555 0.76 1.2
38,163 - 11923 mRNA_3555 0.81 -1.4
38,183 + 11923 mRNA_3555 0.83 -3.5
38,193 + 11923 mRNA_3555 0.85 -1.3
38,234 + 11923 mRNA_3555 0.90 -3.3
38,253 - -1.7
38,254 - -2.5
38,256 - 0.1
38,257 + -0.9
38,258 - 0.0
38,258 - 0.3
38,269 + -2.0
38,272 + -0.0
38,275 + -0.6
38,285 + -2.2
38,411 + -1.1
38,421 - 0.2
38,431 - -0.2
38,476 + 0.1
38,548 + -3.1
38,580 + -0.8
38,612 + -1.5
38,706 - 11924 mRNA_3556 0.11 -1.4
38,767 + 11924 mRNA_3556 0.14 -1.1
38,904 + 11924 mRNA_3556 0.19 -1.7
39,199 - 11924 mRNA_3556 0.32 -2.2
39,206 + 11924 mRNA_3556 0.32 -0.2
39,447 - 11924 mRNA_3556 0.42 2.1
39,471 - 11924 mRNA_3556 0.43 -2.1
39,481 + 11924 mRNA_3556 0.44 -1.4
39,517 + 11924 mRNA_3556 0.45 -2.2
39,760 + 11924 mRNA_3556 0.55 0.1
39,781 - 11924 mRNA_3556 0.56 -2.4
39,865 - 11924 mRNA_3556 0.60 -1.0
40,205 - 11924 mRNA_3556 0.74 -1.3
40,298 + 11924 mRNA_3556 0.78 -1.2
40,353 + 11924 mRNA_3556 0.80 0.0
40,357 + 11924 mRNA_3556 0.81 -1.5
40,402 - 11924 mRNA_3556 0.82 -4.1
40,937 + -1.7
40,974 + 0.6
41,079 - -2.3
41,080 - -0.6
41,082 - -2.5
41,084 + -0.5
41,224 + 0.2
41,226 - -2.0
41,227 + -1.9
41,234 + -1.9
41,242 + -1.7
41,261 - -1.7
41,369 - -0.7
41,371 - -0.7
41,391 - -2.5
41,396 + -0.9
41,405 + -1.4
41,564 - 0.2
41,678 - -1.1
41,692 - 11925 mRNA_3557 0.10 -0.5
41,692 + 11925 mRNA_3557 0.10 -1.7