Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3540

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4641 to 6092 11907 mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6477 to 8169 11908 mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8355 to 10759 11909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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5,498 + 11907 mRNA_3539 0.59 0.4
5,519 - 11907 mRNA_3539 0.60 -1.3
5,520 - 11907 mRNA_3539 0.61 -1.3
5,535 - 11907 mRNA_3539 0.62 1.1
5,538 - 11907 mRNA_3539 0.62 0.2
5,575 + 11907 mRNA_3539 0.64 0.6
5,695 - 11907 mRNA_3539 0.73 -2.2
5,764 - 11907 mRNA_3539 0.77 -3.0
5,808 - 11907 mRNA_3539 0.80 -1.7
5,822 - 11907 mRNA_3539 0.81 -2.7
5,827 - 11907 mRNA_3539 0.82 -1.7
5,838 - 11907 mRNA_3539 0.82 -0.9
5,842 - 11907 mRNA_3539 0.83 -1.1
5,932 - 11907 mRNA_3539 0.89 1.2
6,014 - -0.5
6,067 + -0.7
6,073 - 2.3
6,257 - -3.3
6,357 + -1.6
6,367 + -2.4
6,383 - -0.1
6,398 - -0.8
6,401 - -1.8
6,413 - -0.6
6,459 + -3.5
6,555 - -1.6
6,699 + 11908 mRNA_3540 0.13 -1.8
6,850 - 11908 mRNA_3540 0.22 -3.3
6,886 + 11908 mRNA_3540 0.24 -1.5
7,439 + 11908 mRNA_3540 0.57 -1.7
7,439 + 11908 mRNA_3540 0.57 -1.5
7,441 - 11908 mRNA_3540 0.57 -2.4
7,682 - 11908 mRNA_3540 0.71 0.7
7,740 - 11908 mRNA_3540 0.75 -1.1
7,778 + 11908 mRNA_3540 0.77 -2.6
7,983 + 11908 mRNA_3540 0.89 -0.6
8,056 + -2.8
8,120 + -0.2
8,123 - 0.2
8,179 - -2.0
8,311 - -1.6
8,312 + -2.0
8,313 - -0.5
8,336 + -1.1
8,340 + 0.3