Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3525

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3524: 11892 - Hypothetical Protein, at 306520 to 307367 11892 mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307662 to 311002 11893 mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311726 to 314497 11894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,829 + 11892 mRNA_3524 0.36 -0.6
306,840 + 11892 mRNA_3524 0.38 -1.9
306,998 - 11892 mRNA_3524 0.56 -1.2
307,043 + 11892 mRNA_3524 0.62 -2.8
307,053 + 11892 mRNA_3524 0.63 -0.1
307,084 + 11892 mRNA_3524 0.67 -1.3
307,125 - 11892 mRNA_3524 0.71 -1.0
307,152 + 11892 mRNA_3524 0.75 0.1
307,164 - 11892 mRNA_3524 0.76 -0.4
307,226 + 11892 mRNA_3524 0.83 -0.5
307,233 - 11892 mRNA_3524 0.84 -1.6
307,233 - 11892 mRNA_3524 0.84 -1.6
307,243 + 11892 mRNA_3524 0.85 -1.1
307,248 + 11892 mRNA_3524 0.86 -0.7
307,257 - 11892 mRNA_3524 0.87 -2.0
307,289 + -0.1
307,351 - -0.4
307,356 + -2.6
307,367 + -2.0
307,405 + -0.5
307,407 - -2.1
307,416 - 0.3
307,456 + -0.1
307,515 - -1.4
307,769 - -0.8
307,816 - -1.2
307,904 - -2.7
307,904 - -1.6
307,905 - -0.0
307,907 - 0.1
307,908 + -0.5
307,910 + -1.1
307,919 - -2.8
307,919 - -3.2
307,937 + -1.0
308,331 - 11893 mRNA_3525 0.20 -2.1
308,369 + 11893 mRNA_3525 0.21 -0.6
308,408 + 11893 mRNA_3525 0.22 -0.5
308,450 - 11893 mRNA_3525 0.24 0.2
308,485 + 11893 mRNA_3525 0.25 -0.5
308,501 + 11893 mRNA_3525 0.25 -3.4
308,510 + 11893 mRNA_3525 0.25 0.3
308,511 + 11893 mRNA_3525 0.25 -0.6
308,620 + 11893 mRNA_3525 0.29 -2.6
308,679 + 11893 mRNA_3525 0.30 -0.7
308,772 + 11893 mRNA_3525 0.33 -0.6
309,252 + 11893 mRNA_3525 0.48 -1.9
309,258 - 11893 mRNA_3525 0.48 -2.2
309,400 + 11893 mRNA_3525 0.52 -0.5
309,676 - 11893 mRNA_3525 0.60 -0.8
309,745 + 11893 mRNA_3525 0.62 0.7
310,426 - 11893 mRNA_3525 0.83 0.4
310,441 + 11893 mRNA_3525 0.83 -0.1
310,702 - 0.4
310,718 + -0.1
310,847 - -2.8
310,862 + -0.4
310,863 + -3.8
310,865 + -1.1
310,884 + -1.2
310,884 - -2.4
310,888 - -4.5
310,889 + -1.9
310,892 - -0.4
310,927 + 0.3
311,062 - 0.7
311,203 + -0.9