Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3514

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277755 to 283906 11881 mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882 mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285817 to 288339 11883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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283,960 + -1.5
283,975 - 0.9
283,992 + -0.2
284,009 - -1.5
284,026 + -0.9
284,148 + -1.5
284,150 - -1.0
284,180 - -2.3
284,190 + -1.1
284,192 - 1.9
284,225 + -2.1
284,313 + 11882 mRNA_3514 0.15 -1.0
284,406 + 11882 mRNA_3514 0.23 0.8
284,442 - 11882 mRNA_3514 0.25 0.1
284,541 - 11882 mRNA_3514 0.33 0.7
284,564 - 11882 mRNA_3514 0.35 0.1
284,567 + 11882 mRNA_3514 0.35 -1.3
284,579 - 11882 mRNA_3514 0.36 0.1
284,580 + 11882 mRNA_3514 0.36 -1.0
284,598 + 11882 mRNA_3514 0.38 -0.3
284,718 - 11882 mRNA_3514 0.47 -2.1
285,167 - 11882 mRNA_3514 0.82 -3.7
285,174 + 11882 mRNA_3514 0.83 -0.9
285,256 + 11882 mRNA_3514 0.89 -1.6
285,285 + -1.4
285,288 - -2.1
285,294 + -0.1
285,326 - -3.1
285,382 + -3.0
285,399 + -0.8
285,434 - 0.9
285,502 - 0.2
285,502 - 0.2
285,510 + 1.6
285,510 + -0.6
285,593 - -1.1
285,609 + -1.3
285,626 - -0.9
285,743 - -1.2
286,196 - 11883 mRNA_3515 0.15 -1.7
286,344 + 11883 mRNA_3515 0.21 -0.1