Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3505

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255381 to 257476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419 11874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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256,969 - 11872 mRNA_3504 0.76 -1.4
257,081 + 11872 mRNA_3504 0.81 -0.9
257,109 + 11872 mRNA_3504 0.82 -1.4
257,126 + 11872 mRNA_3504 0.83 -0.5
257,387 - -0.6
257,395 + -0.3
257,407 + -2.6
257,548 + -0.3
257,553 - -0.8
257,555 + -2.3
257,577 - -3.2
257,579 + -0.8
257,699 - -0.8
258,002 - 11873 mRNA_3505 0.14 -2.4
258,168 - 11873 mRNA_3505 0.26 -0.6
258,199 - 11873 mRNA_3505 0.28 -1.7
258,295 - 11873 mRNA_3505 0.35 0.6
259,139 - -1.8
259,274 - -1.1
259,288 + -3.1
259,288 + -0.4
259,307 + -2.0
259,314 - -2.8
259,315 + -0.6
259,414 + 0.2
259,437 - -2.4
259,594 + -1.9
259,893 - 11874 mRNA_3506 0.33 -5.1
260,009 + 11874 mRNA_3506 0.48 -1.2
260,042 - 11874 mRNA_3506 0.52 -2.0
260,062 + 11874 mRNA_3506 0.54 -2.2