Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3497

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239425 to 240814 11864 mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241064 to 241942 11865 mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242240 to 242927 11866

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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240,235 + 11864 mRNA_3496 0.58 -0.6
240,425 - 11864 mRNA_3496 0.72 -3.1
240,526 - 11864 mRNA_3496 0.79 -0.4
240,714 + -3.3
240,815 + -1.4
240,824 - 0.7
240,826 - -1.6
240,836 + -0.6
240,844 - 0.2
240,954 - 0.2
240,971 - -2.8
240,985 + -2.0
240,988 + -1.6
240,998 - -1.7
241,007 + -1.5
241,150 + -1.0
241,253 + 11865 mRNA_3497 0.22 -0.1
241,257 - 11865 mRNA_3497 0.22 -1.2
241,281 - 11865 mRNA_3497 0.25 -0.1
241,299 - 11865 mRNA_3497 0.27 -2.0
241,435 - 11865 mRNA_3497 0.42 1.3
241,566 - 11865 mRNA_3497 0.57 -0.9
241,583 + 11865 mRNA_3497 0.59 0.3
241,686 - 11865 mRNA_3497 0.71 0.4
241,724 - 11865 mRNA_3497 0.75 -0.5
241,859 + -1.1
241,877 + -0.4
241,993 - -1.2
242,010 + -1.1
242,142 + 0.2
242,290 + -3.0
242,428 - 11866 mRNA_3498 0.27 -0.4
242,707 - 11866 mRNA_3498 0.68 -1.1
242,875 + -1.2