Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3493

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3492: 11860 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,SUPERFAMILY--SSF53927, at 233269 to 234150 11860 mRNA_3493: 11861 - K06944 K06944 uncharacterized protein, at 234580 to 236697 11861 mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237336 to 238428 11862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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233,638 - 11860 mRNA_3492 0.42 0.2
233,913 - 11860 mRNA_3492 0.73 -1.9
234,515 + -1.6
235,107 + 11861 mRNA_3493 0.25 1.2
235,785 - 11861 mRNA_3493 0.57 -0.0
235,841 + 11861 mRNA_3493 0.60 -0.2
235,999 - 11861 mRNA_3493 0.67 -2.8
236,116 - 11861 mRNA_3493 0.73 -1.6
236,177 + 11861 mRNA_3493 0.75 0.6
237,145 - -0.0
237,154 + -1.4
237,155 - -1.7
237,160 - -0.9
237,163 + -0.9
237,163 - -5.0
237,168 - -3.0
237,168 + 0.1
237,173 - -0.4
237,174 + -1.1
237,179 - -1.6
237,180 + -3.2
237,182 + 2.1
237,214 + -0.3
237,372 + -2.3
237,474 - 11862 mRNA_3494 0.13 -2.5