Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226345 to 227373 11857 mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227582 to 231954 11858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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225,354 + -0.2
225,572 - -1.2
225,757 + -1.4
225,774 + -3.5
225,876 + -1.1
226,021 + -1.5
226,035 - 0.0
226,038 - -4.7
226,041 + 0.3
226,150 - 1.3
226,155 - -0.2
226,186 + 0.3
226,283 + -0.2
226,289 - 0.6
226,311 - -1.2
226,316 + -2.4
226,321 + 1.3
226,349 + -1.6
226,368 - -0.8
226,460 + 11857 mRNA_3489 0.11 -2.3
227,337 - -0.5
227,355 + -4.1
227,371 + -0.2
227,558 + -0.8