Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3477

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3476: 11844 - K01915 glnA, GLUL glutamine synthetase, at 198470 to 200585 11844 mRNA_3477: 11845 - K07088 K07088 uncharacterized protein, at 201579 to 204327 11845 mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204722 to 206830 11846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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200,624 + -2.3
200,627 - -1.0
200,630 + -3.5
200,631 - -1.0
200,637 + -2.0
200,648 - -2.8
200,648 + -0.1
200,650 + -2.8
200,702 - -0.8
200,703 + -2.4
200,705 - -0.2
200,707 - -1.0
200,707 - -1.3
200,709 + -1.1
200,709 - -0.8
200,717 - -1.2
200,727 + -1.0
200,734 - -2.0
200,739 - -0.7
200,779 + -1.9
200,846 - -1.9
200,847 - -1.5
200,865 - -1.9
200,868 + -2.0
200,871 + -1.7
200,874 + -2.1
200,882 + 0.3
200,890 - -0.9
201,008 + -1.7
201,022 + 0.7
201,026 + 0.3
201,032 - -1.0
201,177 - -1.6
201,178 + -1.6
201,208 + -0.7
201,429 - -4.7
201,432 + -3.0
201,602 + -0.8
201,884 - 11845 mRNA_3477 0.11 -3.3
202,630 + 11845 mRNA_3477 0.38 -0.3
203,158 + 11845 mRNA_3477 0.57 -2.1
203,850 + 11845 mRNA_3477 0.83 0.2
204,086 + -1.2
204,093 + -1.6
204,275 - -0.6
204,292 + -2.0
204,411 - -1.9
204,562 + 0.9
204,863 - -1.4