Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3471

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179330 to 181535 11838 mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181846 to 184835 11839 mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185364 to 186603 11840

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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181,131 + 11838 mRNA_3470 0.82 0.1
181,582 - -1.5
181,716 - -2.9
181,869 - -1.1
181,895 + -1.1
182,180 + 11839 mRNA_3471 0.11 -0.2
182,183 - 11839 mRNA_3471 0.11 -1.8
182,191 - 11839 mRNA_3471 0.12 -1.8
182,192 - 11839 mRNA_3471 0.12 -0.8
182,243 - 11839 mRNA_3471 0.13 0.9
182,312 + 11839 mRNA_3471 0.16 -2.0
182,326 + 11839 mRNA_3471 0.16 -1.7
182,342 + 11839 mRNA_3471 0.17 -0.7
182,584 - 11839 mRNA_3471 0.25 0.7
182,587 + 11839 mRNA_3471 0.25 -0.3
182,726 - 11839 mRNA_3471 0.29 -2.0
182,738 + 11839 mRNA_3471 0.30 -2.6
182,779 - 11839 mRNA_3471 0.31 -0.1
182,907 + 11839 mRNA_3471 0.35 0.3
183,067 - 11839 mRNA_3471 0.41 -0.7
183,494 - 11839 mRNA_3471 0.55 -2.2
183,658 - 11839 mRNA_3471 0.61 -1.4
184,235 + 11839 mRNA_3471 0.80 -1.5
184,391 - 11839 mRNA_3471 0.85 -3.0
184,488 + 11839 mRNA_3471 0.88 -2.3
184,662 + -0.8
184,825 + -2.3
184,964 + -2.2
185,262 - -3.2
185,542 + 11840 mRNA_3472 0.14 -3.0
185,573 + 11840 mRNA_3472 0.17 -0.2
185,689 + 11840 mRNA_3472 0.26 -1.5
185,693 - 11840 mRNA_3472 0.27 -2.0
185,829 + 11840 mRNA_3472 0.38 0.5