Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3460

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147794 to 151467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151624 to 153827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,641 - 11827 mRNA_3459 0.77 -0.6
150,671 - 11827 mRNA_3459 0.78 -0.9
150,794 - 11827 mRNA_3459 0.82 0.7
150,834 - 11827 mRNA_3459 0.83 -0.9
150,913 - 11827 mRNA_3459 0.85 -0.7
150,916 + 11827 mRNA_3459 0.85 0.8
150,943 + 11827 mRNA_3459 0.86 -2.7
151,047 + 11827 mRNA_3459 0.89 -0.9
151,093 - 11827 mRNA_3459 0.90 -1.3
151,172 + -0.2
151,281 - -0.2
151,391 - -1.0
151,395 - -0.4
151,397 - 0.4
151,403 - -1.3
151,411 - -0.8
151,434 + -1.9
151,520 + 0.7
151,525 + -1.8
151,529 + 0.3
151,559 + 0.2
151,564 + -1.9
151,568 + -1.5
151,570 + -0.5
151,574 + -0.7
151,710 + -1.2
151,714 - -1.4
151,866 + 11828 mRNA_3460 0.11 -0.5
152,018 - 11828 mRNA_3460 0.18 -2.0
152,362 - 11828 mRNA_3460 0.33 0.0
152,510 + 11828 mRNA_3460 0.40 -1.3
152,866 - 11828 mRNA_3460 0.56 -0.4
153,141 - 11828 mRNA_3460 0.69 -1.5
153,141 - 11828 mRNA_3460 0.69 0.0
153,147 + 11828 mRNA_3460 0.69 0.3
153,204 - 11828 mRNA_3460 0.72 -3.9
153,331 - 11828 mRNA_3460 0.77 0.1
153,332 + 11828 mRNA_3460 0.77 0.1
153,334 + 11828 mRNA_3460 0.78 -0.7
153,344 - 11828 mRNA_3460 0.78 -3.1
153,345 - 11828 mRNA_3460 0.78 0.2
153,477 + 11828 mRNA_3460 0.84 -1.0
153,517 + 11828 mRNA_3460 0.86 -1.7
153,525 + 11828 mRNA_3460 0.86 -1.3
153,646 + -1.4
153,753 - -1.5
153,775 - -0.6
153,793 - -1.4
153,801 - -1.7
153,808 - -0.4
153,909 - -0.5
153,916 + -1.7
153,939 - -1.1
154,078 + 0.5
154,215 + -1.4
154,351 - -1.5
154,369 - -1.3
154,376 + -0.8