Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3455

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139645 to 140934 11822 mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141028 to 142309 11823 mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142552 to 143804 11824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,295 + 11822 mRNA_3454 0.50 -0.0
140,352 + 11822 mRNA_3454 0.55 -1.5
140,366 - 11822 mRNA_3454 0.56 -1.4
140,397 + 11822 mRNA_3454 0.58 -1.4
140,458 + 11822 mRNA_3454 0.63 -0.8
140,461 - 11822 mRNA_3454 0.63 -1.2
140,461 - 11822 mRNA_3454 0.63 -0.0
140,531 + 11822 mRNA_3454 0.69 1.0
140,629 - 11822 mRNA_3454 0.76 -1.2
140,645 - 11822 mRNA_3454 0.78 -0.8
140,811 - -0.6
140,996 - -1.0
141,158 - 11823 mRNA_3455 0.10 -0.8
141,232 + 11823 mRNA_3455 0.16 -1.1
141,251 + 11823 mRNA_3455 0.17 0.6
141,822 + 11823 mRNA_3455 0.62 0.7
141,960 + 11823 mRNA_3455 0.73 -1.1
142,134 + 11823 mRNA_3455 0.86 -2.7
142,141 - 11823 mRNA_3455 0.87 -1.3
142,163 - 11823 mRNA_3455 0.89 -3.5
142,198 + -2.0
142,396 + -0.7
142,397 - 1.9
142,399 - -0.4
142,405 - -0.6
142,409 - -2.0
142,410 - -2.4
142,414 - -1.7
142,419 + 0.4
142,435 - -1.5
142,436 + -0.8
142,560 - -0.7
142,590 - -2.9
142,593 + 0.3
142,603 + -1.2
143,014 - 11824 mRNA_3456 0.37 1.4
143,028 + 11824 mRNA_3456 0.38 -2.5