Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3450

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126631 to 128651 11817 mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129414 to 132360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132983 to 136040 11819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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128,709 - -1.7
128,735 - -3.0
128,746 + -1.6
128,748 - -2.5
128,870 + -1.8
128,887 - -0.9
128,898 - -1.4
128,905 - -1.3
128,977 - -2.3
129,190 + -0.8
129,223 - -1.5
129,231 - -1.0
129,513 - -2.1
129,788 + 11818 mRNA_3450 0.13 -4.4
129,790 + 11818 mRNA_3450 0.13 -1.0
129,808 + 11818 mRNA_3450 0.13 -0.7
129,818 + 11818 mRNA_3450 0.14 -0.5
130,955 - 11818 mRNA_3450 0.52 -1.5
130,969 + 11818 mRNA_3450 0.53 -2.2
132,130 + -1.4
132,275 - -2.7
132,304 + -1.9
132,411 + -0.0
132,434 + -0.1
132,571 - -1.1
132,571 - -2.2
132,578 + -1.2
132,587 - -2.0
132,712 - -1.1
132,735 - 0.1
132,869 - -2.5
132,874 + -0.6
132,879 + 0.0
132,889 - -1.4
133,039 + -0.5
133,041 + -1.4
133,042 - -0.6