Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3433

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3432: 11800 - BLAST RecF/RecN/SMC protein [Sistotremastrum niveocremeum H..., at 86676 to 87359 11800 mRNA_3433: 11801 - HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479, at 88231 to 90113 11801 mRNA_3434: 11802 - K00237 SDHD, SDH4 succinate dehydrogenase (ubiquinone) membrane anchor subunit, at 90402 to 91512 11802

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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87,271 + 11800 mRNA_3432 0.87 -0.5
87,335 + -1.1
87,389 - -1.5
87,422 + -2.6
87,422 - -2.9
87,425 + -2.0
87,443 - -1.8
87,447 + -2.7
87,447 + -1.3
87,488 - 1.4
87,514 - 2.7
87,526 + 2.1
87,537 - 0.1
87,549 + -1.2
87,564 - -2.5
87,566 - -3.1
87,693 + 0.1
87,765 + -1.0
87,781 - -2.1
87,853 - -0.0
87,858 - -2.0
87,871 - 2.1
87,872 + -1.0
87,909 - -1.1
88,004 + 0.1
88,016 + -1.0
88,020 + -0.1
88,070 + 0.2
88,115 + -1.8
88,120 - -4.9
88,279 - -0.8
88,290 + -2.6
88,574 + 11801 mRNA_3433 0.18 -1.6
88,583 - 11801 mRNA_3433 0.19 -1.8
88,592 + 11801 mRNA_3433 0.19 0.9
88,593 - 11801 mRNA_3433 0.19 -2.0
88,600 + 11801 mRNA_3433 0.20 -1.7
88,614 + 11801 mRNA_3433 0.20 0.0
88,707 - 11801 mRNA_3433 0.25 0.6
88,709 - 11801 mRNA_3433 0.25 -2.2
88,725 + 11801 mRNA_3433 0.26 -0.2
88,749 + 11801 mRNA_3433 0.28 -2.1
88,783 - 11801 mRNA_3433 0.29 -2.6
88,854 - 11801 mRNA_3433 0.33 0.1
88,855 + 11801 mRNA_3433 0.33 -1.7
88,873 + 11801 mRNA_3433 0.34 -3.5
88,916 - 11801 mRNA_3433 0.36 -1.9
89,111 - 11801 mRNA_3433 0.47 -1.8
89,136 - 11801 mRNA_3433 0.48 -2.1
89,140 + 11801 mRNA_3433 0.48 -3.0
89,148 - 11801 mRNA_3433 0.49 -0.5
89,149 + 11801 mRNA_3433 0.49 -2.2
89,157 - 11801 mRNA_3433 0.49 -2.6
89,273 - 11801 mRNA_3433 0.55 0.6
89,296 + 11801 mRNA_3433 0.57 -1.4
89,428 - 11801 mRNA_3433 0.64 -3.3
89,571 - 11801 mRNA_3433 0.71 -2.7
90,299 + 0.5
90,330 - -3.2
90,332 + -1.2
90,335 - -1.7
90,337 - -0.4
90,441 - -1.2
90,454 + 0.1
90,456 - 0.6
90,460 - -0.6
90,484 + -0.6