Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3420

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50010 to 53314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53705 to 57912 11788 mRNA_3421: 11789 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 58356 to 61690 11789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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52,981 - 11787 mRNA_3419 0.90 -1.7
53,417 - -0.5
53,602 - -2.2
53,604 - 0.3
53,609 + 1.0
53,615 - 1.3
53,615 - -2.1
53,616 - -0.5
53,624 + 0.6
54,355 - 11788 mRNA_3420 0.15 1.0
54,644 - 11788 mRNA_3420 0.22 0.8
54,766 + 11788 mRNA_3420 0.25 -0.5
54,778 - 11788 mRNA_3420 0.25 -0.8
55,615 - 11788 mRNA_3420 0.45 -3.6
55,807 + 11788 mRNA_3420 0.50 -0.9
56,111 + 11788 mRNA_3420 0.57 -2.1
56,114 + 11788 mRNA_3420 0.57 -2.9
56,247 - 11788 mRNA_3420 0.60 -0.5
57,408 + 11788 mRNA_3420 0.88 -1.2
57,575 - -1.0
57,711 - -1.9
57,717 - -2.0
57,829 - 0.7
57,865 - 1.0
57,979 + 0.4
57,997 + -2.7
58,017 + -0.9
58,020 - -2.4
58,023 + -1.1
58,028 + -1.5
58,028 - 0.4
58,141 - -0.4