Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3417

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3416: 11784 - Hypothetical Protein, at 42396 to 43510 11784 mRNA_3417: 11785 - Hypothetical Protein, at 43744 to 46912 11785 mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47383 to 48909 11786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,777 - 11784 mRNA_3416 0.34 -3.4
42,777 + 11784 mRNA_3416 0.34 -0.8
43,052 - 11784 mRNA_3416 0.59 -2.3
43,346 - 11784 mRNA_3416 0.85 -0.3
44,090 + 11785 mRNA_3417 0.11 -3.2
44,226 - 11785 mRNA_3417 0.15 0.4
44,942 + 11785 mRNA_3417 0.38 0.2
44,944 - 11785 mRNA_3417 0.38 3.0
45,089 - 11785 mRNA_3417 0.42 -1.7
45,095 + 11785 mRNA_3417 0.43 -1.6
45,112 + 11785 mRNA_3417 0.43 -1.6
45,218 - 11785 mRNA_3417 0.47 -0.7
45,251 + 11785 mRNA_3417 0.48 -1.3
45,358 + 11785 mRNA_3417 0.51 -0.3
45,367 + 11785 mRNA_3417 0.51 1.4
45,832 - 11785 mRNA_3417 0.66 0.1
46,108 - 11785 mRNA_3417 0.75 -2.4
46,545 - 11785 mRNA_3417 0.88 -2.0
46,554 - 11785 mRNA_3417 0.89 -2.7
46,560 + 11785 mRNA_3417 0.89 -2.2
46,679 - -0.6
46,689 - -2.3
46,695 - -1.4
46,983 - -0.5
46,989 - -0.9
46,998 + 0.8
47,100 + -1.5
47,112 + -0.6
47,138 - -0.9
47,157 - -2.9
47,157 + -2.7
47,159 + 0.4
47,161 + -4.8
47,267 - -0.7
47,270 + -1.1
47,277 + -1.0
47,299 + -0.1
47,301 + 0.4
47,308 - -2.0
47,308 - -1.5
47,312 + -2.0
47,445 + 0.1