Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3406

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10068 to 11831 11773 mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13609 to 17494 11775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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11,866 + -0.4
12,019 - -2.4
12,034 - -2.3
12,065 - 0.2
12,274 - 0.1
12,305 + -0.1
12,316 - -2.1
12,334 - -1.4
12,341 - -1.1
12,391 + -0.1
12,447 - -2.2
12,453 - 1.0
12,469 - -3.3
12,471 - -0.4
12,473 - -3.8
12,484 - -0.6
12,488 + -2.2
12,503 + -1.5
12,508 + -3.3
12,517 + -1.5
12,519 + -0.2
12,648 + 11774 mRNA_3406 0.20 -1.8
12,661 + 11774 mRNA_3406 0.21 -1.2
12,772 - 11774 mRNA_3406 0.33 -2.1
12,778 + 11774 mRNA_3406 0.34 0.2
12,779 - 11774 mRNA_3406 0.34 -1.2
12,799 + 11774 mRNA_3406 0.36 -1.4
12,803 - 11774 mRNA_3406 0.37 -0.3
12,805 - 11774 mRNA_3406 0.37 -1.6
12,817 - 11774 mRNA_3406 0.38 -2.3
12,821 + 11774 mRNA_3406 0.39 -2.6
12,821 - 11774 mRNA_3406 0.39 -1.2
12,827 + 11774 mRNA_3406 0.39 -2.2
12,936 - 11774 mRNA_3406 0.51 -0.3
12,936 - 11774 mRNA_3406 0.51 -0.2
12,949 + 11774 mRNA_3406 0.53 -3.8
12,957 + 11774 mRNA_3406 0.54 -0.9
12,964 - 11774 mRNA_3406 0.54 -1.5
12,964 + 11774 mRNA_3406 0.54 -2.7
12,971 - 11774 mRNA_3406 0.55 -1.7
12,973 - 11774 mRNA_3406 0.55 -1.9
12,976 - 11774 mRNA_3406 0.56 -1.7
13,100 - 11774 mRNA_3406 0.69 -2.3
13,114 - 11774 mRNA_3406 0.71 -2.1
13,119 - 11774 mRNA_3406 0.71 0.8
13,122 - 11774 mRNA_3406 0.71 -0.3
13,130 + 11774 mRNA_3406 0.72 -2.9
13,136 - 11774 mRNA_3406 0.73 -2.0
13,225 - 11774 mRNA_3406 0.83 -0.3
13,242 - 11774 mRNA_3406 0.84 -1.4
13,273 + 11774 mRNA_3406 0.88 -1.5
13,286 - 11774 mRNA_3406 0.89 1.3
13,300 + -0.8
13,318 - -2.1
13,343 + 0.2
13,348 - -0.0
13,348 - 0.0
13,381 - -2.6
13,386 + -1.4
13,389 - -2.1
13,399 - 1.4
13,401 - -2.6
13,415 - -0.6
13,415 + 0.1
13,418 + 1.4
13,427 + 0.7
13,445 - 0.1
13,455 - -1.3
13,466 - -0.3
13,536 - -2.2
13,583 - -1.9
13,750 + 1.4
14,003 - 11775 mRNA_3407 0.10 0.5
14,040 - 11775 mRNA_3407 0.11 -1.5