Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3405

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3404: 11772 - K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1, at 8122 to 9979 11772 mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10068 to 11831 11773 mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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10,617 + 11773 mRNA_3405 0.31 -2.1
10,659 + 11773 mRNA_3405 0.34 -0.5
11,023 - 11773 mRNA_3405 0.54 0.7
11,294 + 11773 mRNA_3405 0.70 -1.1
11,866 + -0.4
12,019 - -2.4
12,034 - -2.3
12,065 - 0.2
12,274 - 0.1
12,305 + -0.1
12,316 - -2.1
12,334 - -1.4
12,341 - -1.1
12,391 + -0.1
12,447 - -2.2
12,453 - 1.0
12,469 - -3.3
12,471 - -0.4
12,473 - -3.8
12,484 - -0.6
12,488 + -2.2
12,503 + -1.5
12,508 + -3.3
12,517 + -1.5
12,519 + -0.2
12,648 + 11774 mRNA_3406 0.20 -1.8
12,661 + 11774 mRNA_3406 0.21 -1.2
12,772 - 11774 mRNA_3406 0.33 -2.1
12,778 + 11774 mRNA_3406 0.34 0.2
12,779 - 11774 mRNA_3406 0.34 -1.2
12,799 + 11774 mRNA_3406 0.36 -1.4
12,803 - 11774 mRNA_3406 0.37 -0.3
12,805 - 11774 mRNA_3406 0.37 -1.6
12,817 - 11774 mRNA_3406 0.38 -2.3
12,821 + 11774 mRNA_3406 0.39 -2.6
12,821 - 11774 mRNA_3406 0.39 -1.2
12,827 + 11774 mRNA_3406 0.39 -2.2