Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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584,873 - 11767 mRNA_3399 0.75 -2.2
584,957 - 11767 mRNA_3399 0.78 -1.9
585,004 - 11767 mRNA_3399 0.79 -1.8
585,100 + 11767 mRNA_3399 0.82 1.1
585,100 - 11767 mRNA_3399 0.82 1.5
585,220 + 11767 mRNA_3399 0.85 -0.1
585,303 - 11767 mRNA_3399 0.88 -0.7
585,320 + 11767 mRNA_3399 0.88 -0.3
585,362 + 11767 mRNA_3399 0.90 -1.8
585,451 + -3.2
585,474 - -1.6
585,514 - -2.9
585,613 - -2.5
585,629 + -0.4
585,638 + -0.2
585,670 + 2.4
585,767 + -2.8
585,777 - -1.0
585,792 - 0.2
585,803 + -0.5
586,039 - 11768 mRNA_3400 0.12 -0.6
587,250 - 11768 mRNA_3400 0.84 -2.2
587,294 + 11768 mRNA_3400 0.86 -1.1
587,300 - 11768 mRNA_3400 0.87 -0.0
587,357 - -2.4
587,397 - -0.5
587,412 + -1.0
587,414 + 1.1
587,414 + -3.2
587,419 + -2.8
587,461 - 2.2
587,466 - -1.9
587,473 - -0.6
587,490 - -3.1
587,535 + -1.1
587,535 - 0.8
587,535 + -1.2
587,551 - -1.0
587,551 + -0.6
587,562 + 2.0
587,564 - -3.3
587,564 - -1.0
587,565 - 0.0
587,569 - -3.4
587,570 + -1.0
587,574 - -2.7
587,581 - -1.9
587,581 - -2.4
587,583 - -0.2
587,593 - 1.4
587,595 - -0.5
587,595 - -0.8
587,600 - -0.7