Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3399

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
581,312 + 11766 mRNA_3398 0.47 -2.1
581,400 + 11766 mRNA_3398 0.56 -0.4
581,407 + 11766 mRNA_3398 0.57 -0.8
581,422 + 11766 mRNA_3398 0.58 -2.7
581,435 - 11766 mRNA_3398 0.59 -0.7
581,524 + 11766 mRNA_3398 0.69 -1.5
581,554 - 11766 mRNA_3398 0.72 1.3
581,570 + 11766 mRNA_3398 0.73 0.4
581,721 + 11766 mRNA_3398 0.89 -3.5
581,729 + 11766 mRNA_3398 0.89 -2.4
581,730 + 11766 mRNA_3398 0.90 -2.0
581,851 - -0.1
581,862 + -0.8
581,882 - -3.4
581,889 - -1.4
581,900 + -1.5
581,912 - -0.0
581,956 + -1.6
581,978 + 1.4
581,983 + -3.2
581,985 - -3.2
581,989 - -0.1
581,993 + -1.0
581,994 - -2.3
582,001 + -0.3
582,007 - -1.2
582,014 + -0.9
582,023 - -0.9
582,026 + -0.6
582,032 + -1.5
582,037 - -0.5
582,039 - -1.3
582,113 - -2.2
582,310 + -0.0
582,311 + 0.8
582,312 + -2.7
582,580 + -3.8
582,721 + 11767 mRNA_3399 0.13 -3.6
582,753 - 11767 mRNA_3399 0.13 -4.6
582,921 - 11767 mRNA_3399 0.18 -0.6
582,942 - 11767 mRNA_3399 0.19 -3.4
582,944 + 11767 mRNA_3399 0.19 -1.9
583,018 - 11767 mRNA_3399 0.21 -0.7
583,039 + 11767 mRNA_3399 0.22 0.4
583,172 + 11767 mRNA_3399 0.26 -1.4
583,332 + 11767 mRNA_3399 0.30 0.4
583,333 - 11767 mRNA_3399 0.30 -3.1
583,456 - 11767 mRNA_3399 0.34 0.0
583,457 + 11767 mRNA_3399 0.34 -1.5
583,459 - 11767 mRNA_3399 0.34 -1.5
583,469 + 11767 mRNA_3399 0.34 -0.1
583,469 + 11767 mRNA_3399 0.34 -2.5
583,471 + 11767 mRNA_3399 0.34 -0.8
583,598 - 11767 mRNA_3399 0.38 -2.3
583,633 - 11767 mRNA_3399 0.39 -0.4
583,834 + 11767 mRNA_3399 0.45 -1.0
583,931 + 11767 mRNA_3399 0.48 -2.0
584,071 + 11767 mRNA_3399 0.52 -3.3
584,082 + 11767 mRNA_3399 0.52 -2.2
584,166 + 11767 mRNA_3399 0.55 -1.1
584,195 - 11767 mRNA_3399 0.56 -0.9
584,325 - 11767 mRNA_3399 0.59 -1.9
584,494 - 11767 mRNA_3399 0.64 -2.4
584,498 - 11767 mRNA_3399 0.64 1.0
584,589 + 11767 mRNA_3399 0.67 -5.0
584,873 - 11767 mRNA_3399 0.75 -2.2
584,957 - 11767 mRNA_3399 0.78 -1.9
585,004 - 11767 mRNA_3399 0.79 -1.8
585,100 + 11767 mRNA_3399 0.82 1.1
585,100 - 11767 mRNA_3399 0.82 1.5
585,220 + 11767 mRNA_3399 0.85 -0.1
585,303 - 11767 mRNA_3399 0.88 -0.7
585,320 + 11767 mRNA_3399 0.88 -0.3
585,362 + 11767 mRNA_3399 0.90 -1.8
585,451 + -3.2
585,474 - -1.6
585,514 - -2.9
585,613 - -2.5
585,629 + -0.4
585,638 + -0.2
585,670 + 2.4
585,767 + -2.8
585,777 - -1.0
585,792 - 0.2
585,803 + -0.5
586,039 - 11768 mRNA_3400 0.12 -0.6