Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3397

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577569 to 578953 11764 mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457 11765 mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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578,282 + 11764 mRNA_3396 0.51 -0.1
578,323 - 11764 mRNA_3396 0.54 0.3
578,414 + 11764 mRNA_3396 0.61 0.2
578,724 + 11764 mRNA_3396 0.83 0.1
578,845 - -2.8
578,848 + 0.6
578,877 + -3.1
579,131 + 0.4
579,137 - -1.9
579,148 - -0.3
579,181 + -0.6
579,214 + -2.4
579,239 + -1.7
579,311 - -0.8
579,442 - 11765 mRNA_3397 0.14 -3.5
579,446 + 11765 mRNA_3397 0.14 -2.3
579,639 + 11765 mRNA_3397 0.31 0.9
579,655 - 11765 mRNA_3397 0.32 -1.7
579,739 - 11765 mRNA_3397 0.39 -0.8
579,748 + 11765 mRNA_3397 0.40 -1.2
579,776 - 11765 mRNA_3397 0.42 -1.8
579,878 - 11765 mRNA_3397 0.51 -0.8
579,923 - 11765 mRNA_3397 0.55 -0.5
579,923 + 11765 mRNA_3397 0.55 -2.3
579,924 - 11765 mRNA_3397 0.55 -3.3
579,980 + 11765 mRNA_3397 0.59 -2.4
580,068 + 11765 mRNA_3397 0.67 -1.4
580,071 - 11765 mRNA_3397 0.67 -3.8
580,212 - 11765 mRNA_3397 0.79 1.0
580,227 - 11765 mRNA_3397 0.80 -0.8
580,388 - -0.2
580,725 + -0.1
581,125 + 11766 mRNA_3398 0.28 1.9
581,187 - 11766 mRNA_3398 0.34 -4.7
581,252 + 11766 mRNA_3398 0.41 -2.3
581,276 - 11766 mRNA_3398 0.43 -1.6
581,276 - 11766 mRNA_3398 0.43 -0.7
581,289 + 11766 mRNA_3398 0.44 -1.4
581,312 + 11766 mRNA_3398 0.47 -2.1
581,400 + 11766 mRNA_3398 0.56 -0.4
581,407 + 11766 mRNA_3398 0.57 -0.8
581,422 + 11766 mRNA_3398 0.58 -2.7
581,435 - 11766 mRNA_3398 0.59 -0.7