Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3392

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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569,180 + 11759 mRNA_3391 0.43 -2.6
569,370 + 11759 mRNA_3391 0.63 -3.0
569,477 + 11759 mRNA_3391 0.74 -0.5
569,477 - 11759 mRNA_3391 0.74 -0.7
569,618 + 11759 mRNA_3391 0.88 1.0
569,639 - -0.7
569,780 - 0.9
569,781 + 0.3
569,791 + -2.0
569,795 - -2.6
569,799 - 0.7
569,803 + -1.1
569,814 - -3.3
569,860 - -0.4
569,864 + -1.2
569,877 + -1.7
569,987 - -3.1
570,007 - -0.7
570,108 - 1.4
570,281 - 11760 mRNA_3392 0.23 0.2
570,566 - 11760 mRNA_3392 0.57 -1.3
570,838 + 11760 mRNA_3392 0.88 -2.3
570,845 + 11760 mRNA_3392 0.89 -0.1
570,873 - -2.1
570,874 + -0.7
570,885 - -0.4
570,982 - -0.4
570,990 - -2.0
570,990 - -1.6
570,995 + -3.6
571,109 - -1.6
571,369 + -0.9
571,413 + -0.4
571,417 - -0.8
571,442 - 0.1
571,443 + 1.4
571,601 - -1.1
571,730 + 11761 mRNA_3393 0.13 -0.8
571,901 + 11761 mRNA_3393 0.20 -1.4