Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3391

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564328 to 568075 11758 mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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567,992 + -2.8
568,107 + -0.8
568,123 - -0.1
568,129 - -2.0
568,134 - -0.6
568,145 - -0.2
568,150 + 0.8
568,169 + -1.4
568,171 + -0.4
568,185 - -1.6
568,306 + -3.7
568,453 - -2.5
568,903 + 11759 mRNA_3391 0.15 0.2
569,054 - 11759 mRNA_3391 0.30 -3.2
569,180 + 11759 mRNA_3391 0.43 -2.6
569,370 + 11759 mRNA_3391 0.63 -3.0
569,477 + 11759 mRNA_3391 0.74 -0.5
569,477 - 11759 mRNA_3391 0.74 -0.7
569,618 + 11759 mRNA_3391 0.88 1.0
569,639 - -0.7
569,780 - 0.9
569,781 + 0.3
569,791 + -2.0
569,795 - -2.6
569,799 - 0.7
569,803 + -1.1
569,814 - -3.3
569,860 - -0.4
569,864 + -1.2
569,877 + -1.7
569,987 - -3.1
570,007 - -0.7
570,108 - 1.4
570,281 - 11760 mRNA_3392 0.23 0.2
570,566 - 11760 mRNA_3392 0.57 -1.3