Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3387

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556119 to 557419 11754 mRNA_3387: 11755 - K01771 plc 1-phosphatidylinositol phosphodiesterase, at 557525 to 558870 11755 mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559521 to 561050 11756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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557,477 - -1.8
557,667 + 11755 mRNA_3387 0.11 -2.8
557,867 - 11755 mRNA_3387 0.25 -1.1
557,867 - 11755 mRNA_3387 0.25 -0.7
557,868 + 11755 mRNA_3387 0.25 1.0
557,927 - 11755 mRNA_3387 0.30 -0.6
557,933 - 11755 mRNA_3387 0.30 -0.7
557,938 + 11755 mRNA_3387 0.31 -1.1
557,941 - 11755 mRNA_3387 0.31 -1.1
558,056 - 11755 mRNA_3387 0.39 -0.4
558,059 - 11755 mRNA_3387 0.40 0.2
558,065 - 11755 mRNA_3387 0.40 -0.7
558,169 - 11755 mRNA_3387 0.48 -1.4
558,262 - 11755 mRNA_3387 0.55 -1.1
558,329 - 11755 mRNA_3387 0.60 -1.4
558,488 + 11755 mRNA_3387 0.72 -1.2
558,501 - 11755 mRNA_3387 0.73 -2.2
558,662 + 11755 mRNA_3387 0.84 -2.5
558,782 + -0.0
558,789 + -1.8
558,906 - 0.6
558,913 - -1.0
558,970 + -2.4
559,068 - -1.8
559,096 + -1.9
559,112 + 0.9
559,158 - -3.3
559,275 - -0.1