Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3385

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554455 to 555770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556119 to 557419 11754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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553,560 + -0.5
554,046 + 0.2
554,060 + -0.1
554,186 + -0.7
554,333 + -0.7
554,339 - -1.5
554,345 - -1.9
554,345 + -0.5
554,346 + -2.3
554,347 + -0.9
554,351 - -1.5
554,361 + -2.1
554,362 + 0.1
554,369 - -0.4
554,389 - -1.8
554,390 + 0.0
554,400 - 0.0
554,632 - 11753 mRNA_3385 0.13 -0.7
554,644 + 11753 mRNA_3385 0.14 -0.7
554,673 - 11753 mRNA_3385 0.17 -3.0
554,789 - 11753 mRNA_3385 0.25 -2.3
554,793 - 11753 mRNA_3385 0.26 -2.8
554,938 + 11753 mRNA_3385 0.37 -2.0
554,941 - 11753 mRNA_3385 0.37 -1.6
555,086 + 11753 mRNA_3385 0.48 -0.0
555,302 - 11753 mRNA_3385 0.64 -0.1
555,385 + 11753 mRNA_3385 0.71 -1.8
555,632 + 11753 mRNA_3385 0.89 -2.3
555,812 + -1.4
555,813 - -1.7
555,958 - -2.5
555,965 + -1.7
555,967 + -2.2
555,975 + -2.1
555,976 - -0.6
555,989 + 3.2
556,011 - -1.4