Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3382

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542498 to 545831 11749 mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546099 to 548480 11750 mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548745 to 549848 11751

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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546,013 - -2.8
546,037 + -0.7
546,042 + -2.0
546,138 + -1.8
546,168 - -4.2
546,171 + -2.8
546,200 - -0.5
546,305 + -0.1
546,316 - -0.9
546,431 - 11750 mRNA_3382 0.14 -5.0
546,437 + 11750 mRNA_3382 0.14 -0.8
546,459 - 11750 mRNA_3382 0.15 -2.1
546,464 - 11750 mRNA_3382 0.15 0.1
546,601 + 11750 mRNA_3382 0.21 -1.9
546,603 - 11750 mRNA_3382 0.21 -1.6
546,728 + 11750 mRNA_3382 0.26 -1.9
546,754 + 11750 mRNA_3382 0.27 -2.4
546,778 + 11750 mRNA_3382 0.29 -2.7
546,958 + 11750 mRNA_3382 0.36 1.1
547,645 - 11750 mRNA_3382 0.65 -1.0
547,759 - 11750 mRNA_3382 0.70 -1.9
548,294 - -1.5
548,607 - -1.4
548,632 - -2.1
548,761 + -1.1
548,773 + -3.7
549,240 + 11751 mRNA_3383 0.45 -4.5