Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3380

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3379: 11747 - Hypothetical Protein, at 537005 to 537944 11747 mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538274 to 541877 11748 mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542498 to 545831 11749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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537,282 + 11747 mRNA_3379 0.29 -1.8
537,427 + 11747 mRNA_3379 0.45 -3.0
537,427 + 11747 mRNA_3379 0.45 -1.3
537,427 + 11747 mRNA_3379 0.45 -2.3
537,433 + 11747 mRNA_3379 0.46 -0.4
537,522 - 11747 mRNA_3379 0.55 -2.1
537,557 - 11747 mRNA_3379 0.59 -3.6
537,614 + 11747 mRNA_3379 0.65 -0.2
537,844 - 11747 mRNA_3379 0.89 -2.2
537,850 + 11747 mRNA_3379 0.90 -0.1
537,960 + -0.6
538,116 - -2.4
538,127 + -0.4
538,240 + -0.8
538,441 - -0.7
538,573 - -0.4
538,704 + 11748 mRNA_3380 0.12 -1.5
538,706 + 11748 mRNA_3380 0.12 -2.3
538,715 + 11748 mRNA_3380 0.12 -2.8
538,726 - 11748 mRNA_3380 0.13 -2.6
538,835 + 11748 mRNA_3380 0.16 -0.6
539,084 - 11748 mRNA_3380 0.22 -2.1
539,133 - 11748 mRNA_3380 0.24 0.2
539,154 - 11748 mRNA_3380 0.24 -1.6
539,215 + 11748 mRNA_3380 0.26 -2.4
539,250 + 11748 mRNA_3380 0.27 -3.0
539,296 - 11748 mRNA_3380 0.28 -0.5
539,302 + 11748 mRNA_3380 0.29 -1.8
539,354 + 11748 mRNA_3380 0.30 0.9
539,561 + 11748 mRNA_3380 0.36 -1.0
539,700 + 11748 mRNA_3380 0.40 -3.2
539,700 + 11748 mRNA_3380 0.40 -1.2
539,701 + 11748 mRNA_3380 0.40 -4.1
539,702 - 11748 mRNA_3380 0.40 -2.1
539,721 + 11748 mRNA_3380 0.40 -4.4
539,737 - 11748 mRNA_3380 0.41 -0.4
539,737 - 11748 mRNA_3380 0.41 -0.8
539,777 + 11748 mRNA_3380 0.42 -2.1
539,864 + 11748 mRNA_3380 0.44 -1.2
539,918 - 11748 mRNA_3380 0.46 0.1
540,199 - 11748 mRNA_3380 0.53 -1.8
540,341 + 11748 mRNA_3380 0.57 -1.4
540,387 + 11748 mRNA_3380 0.59 0.8
540,611 + 11748 mRNA_3380 0.65 0.4
540,689 + 11748 mRNA_3380 0.67 0.4
541,136 + 11748 mRNA_3380 0.79 -1.3
541,477 + 11748 mRNA_3380 0.89 -0.6
541,570 - -1.1
541,594 - -1.7
541,632 + -3.8
541,744 - -0.4
541,902 + -2.5
542,042 - -2.7
542,052 + 0.3
542,063 + -1.7
542,068 + 0.7
542,072 + -3.5
542,079 + -2.7
542,082 - -3.9
542,089 + -1.2
542,221 - -0.9
542,224 + -2.0
542,372 + -1.1
542,466 - 0.6
542,505 - -1.0