Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3377

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744 mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531386 to 533428 11745 mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533955 to 535983 11746

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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530,412 + 11744 mRNA_3376 0.64 -4.0
530,414 - 11744 mRNA_3376 0.64 -2.2
530,419 + 11744 mRNA_3376 0.65 -1.2
530,439 - 11744 mRNA_3376 0.65 0.2
530,569 + 11744 mRNA_3376 0.71 -0.6
530,694 - 11744 mRNA_3376 0.76 -0.7
530,736 + 11744 mRNA_3376 0.78 0.1
531,106 - -2.5
531,285 + -1.5
531,286 - -0.5
531,481 - -1.3
531,553 - -1.7
531,598 - 11745 mRNA_3377 0.10 1.0
531,687 + 11745 mRNA_3377 0.15 0.7
531,911 + 11745 mRNA_3377 0.26 -2.5
532,134 + 11745 mRNA_3377 0.37 0.1
532,363 - 11745 mRNA_3377 0.48 -2.6
532,612 + 11745 mRNA_3377 0.60 -1.3
532,612 + 11745 mRNA_3377 0.60 -0.4
532,622 + 11745 mRNA_3377 0.60 -1.8
532,635 + 11745 mRNA_3377 0.61 -1.8
532,816 + 11745 mRNA_3377 0.70 -1.5
532,824 + 11745 mRNA_3377 0.70 -3.5
532,881 - 11745 mRNA_3377 0.73 -2.0
532,924 - 11745 mRNA_3377 0.75 -4.1
532,924 - 11745 mRNA_3377 0.75 0.0
532,925 + 11745 mRNA_3377 0.75 -1.8
532,927 - 11745 mRNA_3377 0.75 -2.0
532,949 - 11745 mRNA_3377 0.77 -0.5
533,086 + 11745 mRNA_3377 0.83 -2.0
533,088 - 11745 mRNA_3377 0.83 -0.5
533,089 + 11745 mRNA_3377 0.83 -1.7
533,308 - -0.6
533,453 - -2.5
533,453 - -1.1
533,524 - -4.1
533,608 - -1.5
533,990 + -1.2
534,033 - -1.1
534,080 - 0.4
534,399 - 11746 mRNA_3378 0.22 -1.6