Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3376

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3375: 11743 - Hypothetical Protein, at 528388 to 528831 11743 mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744 mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531386 to 533428 11745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,922 + -1.9
527,997 + -1.9
528,021 - -3.0
528,022 - -2.2
528,038 + -1.4
528,061 + -0.9
528,071 - -1.6
528,091 + -2.4
528,091 - -3.2
528,182 - -2.6
528,236 + -1.7
528,359 - -0.4
528,401 + -2.1
528,486 - 11743 mRNA_3375 0.22 -0.7
528,667 + 11743 mRNA_3375 0.63 0.1
528,845 + -2.3
528,846 + -1.6
529,000 + -0.5
529,055 - 0.3
529,187 - 11744 mRNA_3376 0.12 -2.7
529,243 + 11744 mRNA_3376 0.15 -1.0
529,265 - 11744 mRNA_3376 0.16 -0.6
529,386 + 11744 mRNA_3376 0.21 -2.1
529,556 - 11744 mRNA_3376 0.28 -2.4
529,789 - 11744 mRNA_3376 0.38 -0.0
529,808 - 11744 mRNA_3376 0.39 -2.7
530,033 + 11744 mRNA_3376 0.48 -1.0
530,034 - 11744 mRNA_3376 0.48 -0.5
530,063 - 11744 mRNA_3376 0.50 -2.8
530,150 - 11744 mRNA_3376 0.53 -2.3
530,173 - 11744 mRNA_3376 0.54 -3.1
530,191 - 11744 mRNA_3376 0.55 -2.1
530,280 + 11744 mRNA_3376 0.59 -2.3
530,412 + 11744 mRNA_3376 0.64 -4.0
530,414 - 11744 mRNA_3376 0.64 -2.2
530,419 + 11744 mRNA_3376 0.65 -1.2
530,439 - 11744 mRNA_3376 0.65 0.2
530,569 + 11744 mRNA_3376 0.71 -0.6
530,694 - 11744 mRNA_3376 0.76 -0.7
530,736 + 11744 mRNA_3376 0.78 0.1
531,106 - -2.5
531,285 + -1.5
531,286 - -0.5
531,481 - -1.3
531,553 - -1.7
531,598 - 11745 mRNA_3377 0.10 1.0
531,687 + 11745 mRNA_3377 0.15 0.7
531,911 + 11745 mRNA_3377 0.26 -2.5
532,134 + 11745 mRNA_3377 0.37 0.1