Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3375

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525330 to 527850 11742 mRNA_3375: 11743 - Hypothetical Protein, at 528388 to 528831 11743 mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,475 - 11742 mRNA_3374 0.85 1.9
527,483 - 11742 mRNA_3374 0.85 -0.9
527,486 + 11742 mRNA_3374 0.86 -1.0
527,776 - -0.1
527,799 - -1.7
527,810 - -1.2
527,922 + -1.9
527,997 + -1.9
528,021 - -3.0
528,022 - -2.2
528,038 + -1.4
528,061 + -0.9
528,071 - -1.6
528,091 + -2.4
528,091 - -3.2
528,182 - -2.6
528,236 + -1.7
528,359 - -0.4
528,401 + -2.1
528,486 - 11743 mRNA_3375 0.22 -0.7
528,667 + 11743 mRNA_3375 0.63 0.1
528,845 + -2.3
528,846 + -1.6
529,000 + -0.5
529,055 - 0.3
529,187 - 11744 mRNA_3376 0.12 -2.7
529,243 + 11744 mRNA_3376 0.15 -1.0
529,265 - 11744 mRNA_3376 0.16 -0.6
529,386 + 11744 mRNA_3376 0.21 -2.1
529,556 - 11744 mRNA_3376 0.28 -2.4
529,789 - 11744 mRNA_3376 0.38 -0.0
529,808 - 11744 mRNA_3376 0.39 -2.7