Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3373

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522269 to 523428 11740 mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523671 to 524664 11741 mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525330 to 527850 11742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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522,777 - 11740 mRNA_3372 0.44 -3.5
522,808 + 11740 mRNA_3372 0.46 -0.3
522,920 + 11740 mRNA_3372 0.56 -2.5
523,191 + 11740 mRNA_3372 0.79 -1.0
523,195 - 11740 mRNA_3372 0.80 -1.2
523,354 + -2.2
523,536 - -4.5
523,774 - 11741 mRNA_3373 0.10 -3.2
524,099 - 11741 mRNA_3373 0.43 -3.7
524,118 - 11741 mRNA_3373 0.45 -2.2
524,133 + 11741 mRNA_3373 0.46 -2.3
524,490 + 11741 mRNA_3373 0.82 -0.7
524,504 - 11741 mRNA_3373 0.84 1.3
524,553 - 11741 mRNA_3373 0.89 -2.9
524,647 - 1.4
524,675 - -0.4
524,703 + -2.6
524,825 - -1.7
524,833 - -2.3
524,834 - -1.1
524,838 + -0.8
524,839 + -1.2
524,843 - -1.0
524,843 - -0.7
524,849 - -2.3
524,850 + -2.0
524,850 + -2.3
524,853 - -0.4
524,856 - -0.8
524,860 - -2.7
524,861 + -0.5
524,863 + -1.1
524,864 - -1.3
524,867 - -1.2
524,874 - -1.2
524,878 - -1.1
524,896 - -0.7
524,903 + -2.3
524,909 + 0.8
524,922 - -0.8
524,923 + -1.6
524,966 - -2.0
525,046 - -1.4
525,046 + -0.8
525,053 - -1.2
525,068 - -0.9
525,071 - -1.2
525,078 + -1.4
525,078 - -1.9
525,079 + 0.6
525,080 + -0.8
525,080 + -0.6
525,090 - -2.5
525,094 - -2.2
525,101 + -1.4
525,102 + -0.1
525,126 + -0.8
525,151 + -0.4
525,187 - -0.0
525,216 - 0.9
525,237 - -1.9
525,240 + -2.2
525,256 + -1.0
525,291 - -1.1
525,310 + -1.8
525,326 + 1.3
525,367 + -2.1
525,367 + -1.9
525,497 + 0.0
525,642 - 11742 mRNA_3374 0.12 -2.3