Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3372

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516330 to 521387 11739 mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522269 to 523428 11740 mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523671 to 524664 11741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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521,291 - -1.1
521,298 + -2.4
521,422 - -0.7
521,540 - -2.0
521,560 + -1.3
521,562 + -0.8
521,569 - -0.5
521,574 + -3.9
521,579 - -3.9
521,583 + -2.0
521,588 - -2.8
521,603 + -0.5
521,607 - -2.7
521,610 + -1.6
521,610 + -2.2
521,631 - -1.6
521,631 + -4.6
521,633 - -1.5
521,736 + -2.2
521,742 + -1.0
521,758 - -0.4
521,905 - 1.0
522,188 + -2.7
522,235 - -1.2
522,445 - 11740 mRNA_3372 0.15 -2.7
522,460 + 11740 mRNA_3372 0.16 -2.3
522,777 - 11740 mRNA_3372 0.44 -3.5
522,808 + 11740 mRNA_3372 0.46 -0.3
522,920 + 11740 mRNA_3372 0.56 -2.5
523,191 + 11740 mRNA_3372 0.79 -1.0
523,195 - 11740 mRNA_3372 0.80 -1.2
523,354 + -2.2
523,536 - -4.5
523,774 - 11741 mRNA_3373 0.10 -3.2
524,099 - 11741 mRNA_3373 0.43 -3.7
524,118 - 11741 mRNA_3373 0.45 -2.2
524,133 + 11741 mRNA_3373 0.46 -2.3