Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3354

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471874 to 478185 11721 mRNA_3354: 11722 - KOG2395 Protein involved in vacuole import and degradation, at 478400 to 482104 11722 mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482754 to 484525 11723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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477,527 - 11721 mRNA_3353 0.90 -0.9
477,644 - -1.6
478,211 - -2.3
478,226 + -2.5
478,228 - -1.4
478,233 + -1.8
478,369 + -1.9
478,784 + 11722 mRNA_3354 0.10 1.3
479,232 - 11722 mRNA_3354 0.22 1.3
480,763 + 11722 mRNA_3354 0.64 -0.3
481,501 + 11722 mRNA_3354 0.84 1.5
482,222 - -0.9
482,367 + -0.5
482,380 + -1.3
482,395 - -1.0
482,395 + -0.7
482,405 + -0.9
482,409 - 0.5
482,409 - -0.8
482,422 + -1.2
482,552 + -1.2
482,560 + -2.0
482,565 + -3.3
482,571 - -2.6
482,571 - -0.6
482,585 - -1.1
482,719 - -1.1
482,735 + -1.0
482,866 - -2.3
482,870 - 0.3
482,874 + -2.1
482,900 - -0.9
483,022 - 11723 mRNA_3355 0.15 -1.2
483,025 - 11723 mRNA_3355 0.15 -2.0
483,027 - 11723 mRNA_3355 0.15 -0.7
483,042 + 11723 mRNA_3355 0.16 -1.1
483,042 - 11723 mRNA_3355 0.16 -1.0
483,065 - 11723 mRNA_3355 0.18 -1.1