Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3352

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461320 to 463748 11719 mRNA_3352: 11720 - K06699 PSME4 proteasome activator subunit 4, at 464153 to 471579 11720 mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471874 to 478185 11721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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463,440 - 11719 mRNA_3351 0.87 -2.5
463,801 + -2.7
463,890 - 0.3
463,919 - 1.2
463,953 + -1.2
464,075 - -2.0
464,075 - -2.7
464,083 - 0.0
464,083 - 2.5
464,085 + 0.3
464,089 - 0.7
464,118 + -3.1
464,143 + 0.1
464,221 + -0.9
464,224 - 0.1
464,232 - -3.7
464,237 - -1.2
464,271 + -2.9
464,352 - 0.8
464,352 - -1.2
464,358 + -0.5
464,373 - 2.1
464,388 + 0.3
464,394 + -0.2
464,395 - -0.0
464,517 - -1.6
464,519 + -0.8
464,651 + -1.6
464,791 + -3.7
464,797 + -0.9
464,814 - -2.1
465,065 + 11720 mRNA_3352 0.12 -1.0
465,261 + 11720 mRNA_3352 0.15 -0.5
465,262 - 11720 mRNA_3352 0.15 -2.0
465,369 + 11720 mRNA_3352 0.16 -1.9
465,431 + 11720 mRNA_3352 0.17 -1.6
465,468 - 11720 mRNA_3352 0.18 -1.1
465,524 + 11720 mRNA_3352 0.18 1.1
465,638 - 11720 mRNA_3352 0.20 1.1
465,781 + 11720 mRNA_3352 0.22 -0.0
465,884 + 11720 mRNA_3352 0.23 -1.7
465,966 + 11720 mRNA_3352 0.24 -1.2
466,085 + 11720 mRNA_3352 0.26 -0.9
466,290 - 11720 mRNA_3352 0.29 -1.2
466,374 + 11720 mRNA_3352 0.30 -1.5
466,537 - 11720 mRNA_3352 0.32 -0.7
466,543 - 11720 mRNA_3352 0.32 -0.5
466,657 - 11720 mRNA_3352 0.34 -1.8
466,659 + 11720 mRNA_3352 0.34 -1.8
466,661 + 11720 mRNA_3352 0.34 -0.1
466,700 + 11720 mRNA_3352 0.34 -2.8
466,751 - 11720 mRNA_3352 0.35 -1.5
466,766 + 11720 mRNA_3352 0.35 -1.8
466,788 - 11720 mRNA_3352 0.35 -0.4
466,880 - 11720 mRNA_3352 0.37 -0.7
466,888 - 11720 mRNA_3352 0.37 -1.4
466,909 - 11720 mRNA_3352 0.37 -2.9
466,970 + 11720 mRNA_3352 0.38 0.3
466,980 - 11720 mRNA_3352 0.38 -1.2
467,006 + 11720 mRNA_3352 0.38 0.0
467,018 + 11720 mRNA_3352 0.39 -0.1
467,054 + 11720 mRNA_3352 0.39 -1.1
467,120 + 11720 mRNA_3352 0.40 -0.4
467,127 + 11720 mRNA_3352 0.40 -0.5
467,192 + 11720 mRNA_3352 0.41 -1.4
467,256 + 11720 mRNA_3352 0.42 -2.6
467,352 + 11720 mRNA_3352 0.43 -2.0
467,352 + 11720 mRNA_3352 0.43 0.0
467,372 + 11720 mRNA_3352 0.43 -0.4
467,504 + 11720 mRNA_3352 0.45 0.8
467,522 + 11720 mRNA_3352 0.45 -1.9
467,527 - 11720 mRNA_3352 0.45 -0.2
467,529 + 11720 mRNA_3352 0.45 -1.8
467,534 + 11720 mRNA_3352 0.46 0.2
468,081 + 11720 mRNA_3352 0.53 -2.5
468,084 - 11720 mRNA_3352 0.53 -1.9
468,144 + 11720 mRNA_3352 0.54 -3.0
468,195 - 11720 mRNA_3352 0.54 -0.6
468,196 + 11720 mRNA_3352 0.54 -0.3
468,425 - 11720 mRNA_3352 0.58 -0.9
468,442 + 11720 mRNA_3352 0.58 0.2
468,575 + 11720 mRNA_3352 0.60 -0.8
468,602 - 11720 mRNA_3352 0.60 -0.9
468,646 - 11720 mRNA_3352 0.60 -0.1
468,670 - 11720 mRNA_3352 0.61 -1.4
468,719 + 11720 mRNA_3352 0.61 -1.7
468,768 - 11720 mRNA_3352 0.62 -0.4
468,769 + 11720 mRNA_3352 0.62 -0.8
468,770 + 11720 mRNA_3352 0.62 0.8
468,785 - 11720 mRNA_3352 0.62 -1.8
468,897 - 11720 mRNA_3352 0.64 -1.3
469,026 + 11720 mRNA_3352 0.66 -1.9
469,027 - 11720 mRNA_3352 0.66 -0.5
469,036 + 11720 mRNA_3352 0.66 -0.9
469,086 + 11720 mRNA_3352 0.66 -0.6
469,101 + 11720 mRNA_3352 0.67 -0.6
469,268 - 11720 mRNA_3352 0.69 -2.8
469,401 + 11720 mRNA_3352 0.71 -3.6
469,457 + 11720 mRNA_3352 0.71 -0.5
469,572 + 11720 mRNA_3352 0.73 -2.9
469,611 - 11720 mRNA_3352 0.73 -0.1
469,680 - 11720 mRNA_3352 0.74 -2.2
469,701 + 11720 mRNA_3352 0.75 -2.8
469,733 + 11720 mRNA_3352 0.75 -0.7
469,735 - 11720 mRNA_3352 0.75 -2.1
469,738 - 11720 mRNA_3352 0.75 -0.9
469,741 + 11720 mRNA_3352 0.75 -1.6
469,748 - 11720 mRNA_3352 0.75 -3.3
469,843 - 11720 mRNA_3352 0.77 1.3
469,854 - 11720 mRNA_3352 0.77 -1.3
469,929 + 11720 mRNA_3352 0.78 -3.7
470,038 + 11720 mRNA_3352 0.79 0.7
470,080 - 11720 mRNA_3352 0.80 -3.5
470,126 - 11720 mRNA_3352 0.80 -0.2
470,130 - 11720 mRNA_3352 0.80 -2.6
470,160 - 11720 mRNA_3352 0.81 -3.3
470,161 + 11720 mRNA_3352 0.81 -1.7
470,161 + 11720 mRNA_3352 0.81 -2.4
470,164 - 11720 mRNA_3352 0.81 -0.2
470,285 - 11720 mRNA_3352 0.83 -0.8
470,300 - 11720 mRNA_3352 0.83 -3.5
470,313 - 11720 mRNA_3352 0.83 0.7
470,425 - 11720 mRNA_3352 0.84 -1.4
470,452 - 11720 mRNA_3352 0.85 -1.1
470,455 + 11720 mRNA_3352 0.85 -1.2
470,488 + 11720 mRNA_3352 0.85 0.2
470,673 - 11720 mRNA_3352 0.88 -1.2
470,694 + 11720 mRNA_3352 0.88 -0.8
470,734 + 11720 mRNA_3352 0.89 -0.9
470,758 - 11720 mRNA_3352 0.89 -2.8
471,049 + -3.4
471,049 + -0.7
471,346 + -2.0
471,462 + -2.0
471,477 + -2.6
471,570 - -2.8
471,605 + -2.5
471,625 - 0.2
471,747 - -2.0
472,059 + 0.2