Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3345

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3344: 11712 - Hypothetical Protein, at 435281 to 435909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436771 to 439819 11713 mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440091 to 443147 11714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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435,942 - -1.7
436,000 + -1.9
436,006 - -1.0
436,024 - -0.9
436,030 + 0.5
436,100 - -1.8
436,112 + -2.9
436,114 - -1.1
436,130 - -3.7
436,132 - -2.4
436,179 + 0.6
436,179 - -1.9
436,180 + -1.2
436,202 - -1.3
436,212 - 1.1
436,229 - -0.9
436,235 + 0.4
436,238 + -0.1
436,240 + -2.3
436,240 + -1.4
436,242 - -3.6
436,242 - -0.0
436,242 - -2.3
436,250 + -1.5
436,250 + -2.5
436,272 + -1.0
436,275 + -0.2
436,278 + -2.1
436,288 + -0.3
436,297 - -1.8
436,303 + -1.6
436,320 + 0.3
436,321 - 0.1
436,325 + 0.2
436,329 + -2.7
436,332 - -0.0
436,332 - -1.8
436,339 - -1.4
436,342 - -0.8
436,356 - -1.6
436,358 + -1.0
436,457 - -1.2
436,458 - -0.5
436,460 + -2.5
436,471 - -2.5
436,476 - 0.6
436,494 + -2.0
436,505 + -2.1
436,508 - -2.4
436,523 + -1.6
436,526 + -3.0
436,530 - -0.9
436,532 + -1.2
436,557 + -2.0
436,674 + -0.5
436,689 - -1.2
436,787 - -2.5
436,816 + -0.2
436,839 + -1.5
436,841 + 1.2
436,875 + -1.5
436,962 + -0.6
436,995 + -0.3
437,119 - 11713 mRNA_3345 0.11 0.7
437,140 - 11713 mRNA_3345 0.12 -0.5
437,260 + 11713 mRNA_3345 0.16 -1.8
437,305 - 11713 mRNA_3345 0.18 -0.4
437,319 + 11713 mRNA_3345 0.18 -2.5
437,558 + 11713 mRNA_3345 0.26 -1.2
437,705 + 11713 mRNA_3345 0.31 -0.8
437,705 + 11713 mRNA_3345 0.31 -3.8
437,733 + 11713 mRNA_3345 0.32 -0.2
437,965 - 11713 mRNA_3345 0.39 -0.5
438,282 + 11713 mRNA_3345 0.50 -2.5
438,285 + 11713 mRNA_3345 0.50 -1.7
438,285 + 11713 mRNA_3345 0.50 -1.8
438,315 - 11713 mRNA_3345 0.51 -1.4
438,592 + 11713 mRNA_3345 0.60 -4.3
438,891 - 11713 mRNA_3345 0.70 -0.8
439,022 + 11713 mRNA_3345 0.74 -3.0
439,202 + 11713 mRNA_3345 0.80 -3.6
439,206 + 11713 mRNA_3345 0.80 0.2
439,210 - 11713 mRNA_3345 0.80 -2.7
439,669 + -2.0
440,206 - 1.1
440,257 - 0.3
440,368 - -0.5
440,395 - -2.4
440,653 - 11714 mRNA_3346 0.18 -3.0
440,681 - 11714 mRNA_3346 0.19 -2.6