Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3344

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433717 to 434732 11711 mRNA_3344: 11712 - Hypothetical Protein, at 435281 to 435909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436771 to 439819 11713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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434,344 - 11711 mRNA_3343 0.62 -0.6
434,349 - 11711 mRNA_3343 0.62 -4.1
434,435 + 11711 mRNA_3343 0.71 -1.7
434,470 - 11711 mRNA_3343 0.74 -0.0
434,627 + 11711 mRNA_3343 0.90 -0.3
434,627 + 11711 mRNA_3343 0.90 -1.3
434,637 + 1.6
434,637 + -2.9
434,642 - 0.9
434,653 + -1.5
434,758 - -0.6
434,771 - -0.7
434,771 - -0.2
434,780 - -0.6
434,788 - -0.1
434,788 + -2.5
434,793 - 0.0
434,793 - 0.2
434,794 - -2.2
434,795 - 0.2
434,797 - -1.5
434,798 - -0.9
434,801 + -2.8
434,806 - -2.7
434,806 - -1.0
434,808 - -1.9
434,810 + -1.8
434,810 - -1.4
434,810 - -2.0
434,811 - -1.3
434,811 - 1.2
434,811 - -0.7
434,814 + -0.5
434,818 - -1.8
434,818 + -1.1
434,820 - -0.2
434,825 + -1.5
434,826 + -2.2
434,835 - -2.2
434,836 + 0.1
434,838 + -1.5
434,839 - -1.0
434,846 + -2.7
434,847 + -2.5
434,851 + -1.1
434,859 + -0.5
434,861 + -0.9
434,862 - -1.0
434,864 + 0.1
434,864 + 0.5
434,901 - -2.3
434,915 - 0.8
434,932 - -1.1
434,933 + -2.0
434,936 + -0.7
434,965 - -0.5
434,968 - -0.1
434,972 - -1.0
434,980 + -0.8
434,982 + -0.2
434,985 - -1.2
434,989 + -1.5
434,994 - 0.1
435,007 - -3.0
435,007 + -0.1
435,008 - -3.5
435,009 + 0.1
435,009 - -1.2
435,014 - -1.8
435,017 - -0.4
435,021 - -1.6
435,022 + -2.8
435,022 + -2.9
435,022 + -1.0
435,022 + -2.4
435,031 - -0.1
435,037 + -0.4
435,039 - -0.4
435,041 - -2.3
435,043 + -0.8
435,044 + -0.9
435,055 + -0.9
435,056 - -1.4
435,057 + -1.0
435,062 - -0.1
435,062 - -1.9
435,067 - -3.0
435,068 - -2.3
435,072 - -1.8
435,077 - -0.1
435,084 - -1.8
435,089 + -1.0
435,092 - 1.3
435,101 + -3.2
435,105 + -0.6
435,184 + -1.2
435,188 - -2.5
435,214 + -0.8
435,218 + -3.3
435,242 + 0.1
435,254 - -1.3
435,270 + -1.6
435,366 - 11712 mRNA_3344 0.14 -0.4
435,367 + 11712 mRNA_3344 0.14 -0.9
435,386 - 11712 mRNA_3344 0.17 -3.1
435,413 + 11712 mRNA_3344 0.21 -0.6
435,415 - 11712 mRNA_3344 0.21 -0.2
435,425 + 11712 mRNA_3344 0.23 -3.2
435,444 + 11712 mRNA_3344 0.26 0.7
435,480 - 11712 mRNA_3344 0.32 -2.0
435,551 - 11712 mRNA_3344 0.43 -1.7
435,558 + 11712 mRNA_3344 0.44 0.1
435,687 + 11712 mRNA_3344 0.65 -2.1
435,708 - 11712 mRNA_3344 0.68 -0.5
435,942 - -1.7
436,000 + -1.9
436,006 - -1.0
436,024 - -0.9
436,030 + 0.5
436,100 - -1.8
436,112 + -2.9
436,114 - -1.1
436,130 - -3.7
436,132 - -2.4
436,179 + 0.6
436,179 - -1.9
436,180 + -1.2
436,202 - -1.3
436,212 - 1.1
436,229 - -0.9
436,235 + 0.4
436,238 + -0.1
436,240 + -2.3
436,240 + -1.4
436,242 - -3.6
436,242 - -0.0
436,242 - -2.3
436,250 + -1.5
436,250 + -2.5
436,272 + -1.0
436,275 + -0.2
436,278 + -2.1
436,288 + -0.3
436,297 - -1.8
436,303 + -1.6
436,320 + 0.3
436,321 - 0.1
436,325 + 0.2
436,329 + -2.7
436,332 - -0.0
436,332 - -1.8
436,339 - -1.4
436,342 - -0.8
436,356 - -1.6
436,358 + -1.0
436,457 - -1.2
436,458 - -0.5
436,460 + -2.5
436,471 - -2.5
436,476 - 0.6
436,494 + -2.0
436,505 + -2.1
436,508 - -2.4
436,523 + -1.6
436,526 + -3.0
436,530 - -0.9
436,532 + -1.2
436,557 + -2.0
436,674 + -0.5
436,689 - -1.2
436,787 - -2.5
436,816 + -0.2
436,839 + -1.5
436,841 + 1.2
436,875 + -1.5