Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3339

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419190 to 423102 11706 mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423436 to 425345 11707 mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425589 to 428080 11708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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422,600 + 11706 mRNA_3338 0.87 -0.5
422,794 - -2.6
422,882 - -0.9
422,914 + -2.0
422,972 - -3.6
422,984 - 0.5
423,151 + -1.6
423,178 - -0.0
423,186 + -0.0
423,189 - -1.9
423,415 - -0.2
423,445 - -3.6
423,571 - -2.1
423,591 + -1.3
423,719 + 11707 mRNA_3339 0.15 -0.8
423,744 + 11707 mRNA_3339 0.16 -1.6
424,043 - 11707 mRNA_3339 0.32 -1.3
424,242 + 11707 mRNA_3339 0.42 0.5
424,400 - 11707 mRNA_3339 0.50 -3.5
424,798 + 11707 mRNA_3339 0.71 -1.0
424,935 - 11707 mRNA_3339 0.78 -2.3
424,944 - 11707 mRNA_3339 0.79 -0.3
424,966 - 11707 mRNA_3339 0.80 -1.9
425,077 + 11707 mRNA_3339 0.86 -2.2
425,121 + 11707 mRNA_3339 0.88 -2.5
425,372 + -0.8
425,378 - -2.9
425,511 + -0.5
425,522 - -2.5
425,565 + -2.8
425,658 - 1.4
425,672 - -1.0
425,675 + -1.2
425,699 + -3.0
425,871 - 11708 mRNA_3340 0.11 -0.7
425,935 - 11708 mRNA_3340 0.14 0.7
426,075 - 11708 mRNA_3340 0.20 -2.8